Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_A15
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.1  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   7.2  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   7.2  
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    25   7.2  
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch...    25   7.2  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   7.2  

>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 576 FPWSLMSVTAPCFLQSTCSGSFTLAGDMN 490
           +PWS   V    +L     G F LAGD N
Sbjct: 399 YPWSQPVVNITDYLSDNGDGHFVLAGDGN 427


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 377 CSCPACKKRGPFRTSG 330
           C+CP C+K  P  T G
Sbjct: 144 CTCPLCRKEVPHETVG 159


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 495  MNLAPRTLPPFMYRFLLCLAVLLKPFI 415
            M++AP  L   +  F  CL ++L+P +
Sbjct: 1482 MSVAPLVLSAIIAFFFFCLGIMLRPIL 1508


>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +2

Query: 236 KLQHRLNYESEVEDNFRMKIYAEHKHIIAKHNQKYEMGLVSYKLGMNKYGD 388
           K ++ +    E  D+F  +++ E  +I  K  ++  +   SYK G+ +Y +
Sbjct: 39  KYRYEMTSTEEDIDSFFSRVFGEKNYISDKSLREQIVTHKSYKHGLKRYNE 89


>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 86  NEIQQLSQAFNSITES*MLALCENCK 9
           NE+Q+L  + N + ES  + + +NCK
Sbjct: 185 NELQRLISSVNVVPESTQINIGQNCK 210


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +3

Query: 198  SSLTWSRKSGVPSSCSTV-STTKARSKTISA 287
            SSL+ S  SG+ SS ST+ S+T++ S + SA
Sbjct: 983  SSLSSSTTSGLTSSSSTIPSSTRSESNSESA 1013


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,874
Number of Sequences: 5004
Number of extensions: 49114
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)