Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A16
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory s...    86   5e-18
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    30   0.50 
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   3.5  
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    27   4.7  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    26   8.2  

>SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory
           subunit Suc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 113

 Score = 86.2 bits (204), Expect = 5e-18
 Identities = 42/90 (46%), Positives = 60/90 (66%), Gaps = 9/90 (10%)
 Frame = +1

Query: 259 IYYSQKYYDEEHEYRHVVLPKEMVKLVPKNH---------LMSEQEWRSIGVQQSQGWVH 411
           I+YS +Y D+E+EYRHV+LPK M+K +P ++         ++ E+EWR +G+ QS GW  
Sbjct: 25  IHYSPRYADDEYEYRHVMLPKAMLKAIPTDYFNPETGTLRILQEEEWRGLGITQSLGWEM 84

Query: 412 YMTHQPEPHILLFRRRITTPPEKN*YEMRF 501
           Y  H PEPHILLF+R      EK+ Y+M+F
Sbjct: 85  YEVHVPEPHILLFKR------EKD-YQMKF 107


>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +1

Query: 259 IYYSQK-YYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSIGVQQSQGW 405
           IY SQ+ ++D          P++M  +VP ++ ++E+ W+ I +Q  QGW
Sbjct: 70  IYPSQQMFFDAMKRKNWNPHPEDMKTIVPIHNAVNERAWQDI-LQWEQGW 118


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 187 SN*GNRSLEIFLSRNLLRDIMSRDIYYSQKY 279
           SN  N S++ F  ++ + D+ S  +YY QKY
Sbjct: 389 SNLLNNSMKGFKGQSSVSDLYSERLYYKQKY 419


>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 3/117 (2%)
 Frame = +3

Query: 141 KGCDLNRIASNLRGRIKLRKPQLGNIFKSKSVA*HHVE---RHLLFPKIL*RRT*IQTCS 311
           K C  +   S+L  R+ +  PQ GN+  ++S      E   R  LF K +  RT  +   
Sbjct: 10  KSCFKSSQTSHLAARVAMENPQKGNVINAQSSRQPSSENEFRENLFFKEM--RTNGKNEH 67

Query: 312 TTKRDGKVSAKKPSNVRTRVAQHRCAAKSRLGALYDTSARTTYFIIPKEDNNTTRKK 482
            T     V  +   + +      +CA  S +    DT    T      ED +  RKK
Sbjct: 68  ETSCRSVVLYRNSKSAKRYPLSTKCARISYMQGNKDTKTALTKKYKSNEDVSRMRKK 124


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +2

Query: 65  SLSSLFRIAPKFLSCCFVKC--VLCIVE 142
           S+SSLF       S CFVKC  +LC+ +
Sbjct: 320 SVSSLFTSKTLLASFCFVKCQKLLCLAK 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,605,847
Number of Sequences: 5004
Number of extensions: 75205
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)