Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_B02
(691 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu... 144 1e-35
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.16
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 29 0.63
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 28 1.5
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 26 4.5
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ... 26 4.5
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 4.5
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1... 26 5.9
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans... 26 5.9
>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 228
Score = 144 bits (348), Expect = 1e-35
Identities = 78/190 (41%), Positives = 111/190 (58%), Gaps = 1/190 (0%)
Frame = +3
Query: 123 LPKTSTVETLHGSLPIQGLKVKAGTRVPAQVRFAHTDI-SYPDFSAYRRKETQDPTSKAN 299
LP +ST +L GS+ + + T + +TD PDFS Y+ K T D +
Sbjct: 19 LPVSSTASSLKGSM----MTIPKFTSIRT-----YTDSPEMPDFSEYQTKSTGDRS---- 65
Query: 300 ETIDERQSFTYLIXXXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKS 479
+ +Y + F++S SA+ADVLA++K E+ L++IPEGK+
Sbjct: 66 ------RVISYAMVGTMGALTAAGAQATVHDFLASWSASADVLAMSKAEVDLSKIPEGKN 119
Query: 480 VTFKWRGKPLFIRHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVP 659
+ KW+GKP+FIRHRT +EI +V + TLRDPQ D R Q P+WLV+IGVCTHLGCVP
Sbjct: 120 LVVKWQGKPVFIRHRTPEEIQEANSVDISTLRDPQADSDRVQKPEWLVMIGVCTHLGCVP 179
Query: 660 VXNAGEFGGY 689
+ AG++GG+
Sbjct: 180 IGEAGDYGGW 189
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 31.1 bits (67), Expect = 0.16
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +3
Query: 33 YFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTSTVETLHGS 161
YF+S+T A S + ++PT +EK++ LPL ST++T+ S
Sbjct: 699 YFRSNTSGSAKS-EGYYIIPT-TEKSLYLPLRNRSTIDTISHS 739
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 29.1 bits (62), Expect = 0.63
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +1
Query: 451 SWLKFQKESLSP--SNGEENHCLSVTGQQTKSRPRRLCLSTRSVTLSTTINVPKTPSGWS 624
S+ K QKE S SN L + + T + R+ TRS +T P PSG S
Sbjct: 528 SFSKSQKEETSSNSSNSSGTRRLGLPQRATPASRERVLPYTRSQAFHSTSLPPSLPSGHS 587
Query: 625 *SAYVPT 645
S +P+
Sbjct: 588 PSIAIPS 594
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 3 SVVXAGHLAPYFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTSTV 143
S + G +AP ++ +++ PL PS ++LP ++ST+
Sbjct: 405 STINDGEVAPPLPQRSRTISSPNSPLSATVLPSSTPILLPRGRSSTL 451
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 4.5
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = +3
Query: 93 TPSEKTVVLPLPKTSTVETLHGSLPIQGLKVKAGTRVPAQVRFAHTDISYPDFSAYRRKE 272
TP +++ P+P + SLPI L T +PA A + S D + K+
Sbjct: 314 TPRKRSPSSPVPLLAKKREGSPSLPIPILPKMKDTSIPA-AEPASSTTSARDQTPSTPKD 372
Query: 273 TQDPTSKANETIDERQSFTY 332
P S A + +E+Q TY
Sbjct: 373 VGSP-STAETSAEEKQMETY 391
>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 396 VSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLFIRHRTADEISTEKAVPV 563
VS ADV +L ++ + L E+P G + + + +F +HR + + E +P+
Sbjct: 71 VSLEKREADVASLGEV-MDLEEVPRGITRQARQLNEYIFPKHRFRNHLVDEGKIPL 125
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 604 KTPSGWS*SAYVPTWDACRXPMLVN 678
KTPS W+ P W+A + PM+ N
Sbjct: 907 KTPS-WNNGTKTPAWNANQTPMVAN 930
>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -3
Query: 545 GRD--FVCCPVTDKQWFSSPFEGDRLSFWNFSQLDFNLG*SQNISSR 411
GRD ++C + K W S + ++ + FS+L LG I +
Sbjct: 155 GRDLAWICFRESGKHWMVSALDAEKRAIQRFSELFSGLGLEDRIEGK 201
>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
transporter Hut1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 25.8 bits (54), Expect = 5.9
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3
Query: 662 YRHASQVGTYADHDQPLGVL 603
+++ S G +A+HD P+G+L
Sbjct: 150 FQNTSSKGKHAEHDSPIGLL 169
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,862,114
Number of Sequences: 5004
Number of extensions: 57562
Number of successful extensions: 183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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