Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A16
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    72   6e-14
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    29   0.70 
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   2.1  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    27   2.1  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    27   2.8  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    27   2.8  
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    27   2.8  
SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    26   3.7  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   6.5  
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    25   6.5  

>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 72.1 bits (169), Expect = 6e-14
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
 Frame = +2

Query: 197 LSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEAY-------- 352
           L  K++ PG  +LG++  ++ + + VS+P  L G V   +IS+  +  L++         
Sbjct: 101 LRYKNITPGSLILGQIAQINTLDLAVSLPNCLTGYVPITNISDKLSDRLDSIDNHAEDNA 160

Query: 353 ---VEDKTEKVRELSQMFKPGQYIAVSVVELAPGNTM--------LTTMPQHVN-SGKRH 496
               ED   ++ +L  ++K GQ++ VSV  L   NT         L+  PQ  N S    
Sbjct: 161 ATEEEDGLNQIPDLMDLYKVGQWVRVSVTALGSENTTKTGKRHIELSLKPQDANGSAPEA 220

Query: 497 TDIXKGAIFQAXVSSXEXHGYVMDLGIPNTTAFLPXK 607
            D   G++ QA VSS E HG V D+GI N T FL  K
Sbjct: 221 ADFVAGSMIQAVVSSIEDHGIVFDIGINNYTGFLSKK 257



 Score = 28.3 bits (60), Expect = 0.93
 Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 1/124 (0%)
 Frame = +2

Query: 206  KSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEA-YVEDKTEKVRE 382
            ++L PG  L+G+V +V++    + +P  + G V    + + Y+ L E  +  +    V  
Sbjct: 1048 ENLTPGSRLVGKVTNVNEAGAILQLPGHMSGRVSRIDMFDDYDILPETKFTRNNLVGVCV 1107

Query: 383  LSQMFKPGQYIAVSVVELAPGNTMLTTMPQHVNSGKRHTDIXKGAIFQAXVSSXEXHGYV 562
            LS +  P + +A+S       +  +    + +NS     D+  G I +  V +    G  
Sbjct: 1108 LS-VDVPNRKVALSARNSRTQSQPVEIKDKEINS---VDDLKIGDICRGFVCNVANQGLF 1163

Query: 563  MDLG 574
            + +G
Sbjct: 1164 VTIG 1167


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 143 DEAQDYLKTHKLNNNLIFLSSKSLRP-GINLLGRVIHVSDVKIKVSMPCKLLGNVMACHI 319
           DEA+ ++ T  L  N++ +    L P G++ LG V+H +   I   +    LG V   HI
Sbjct: 227 DEAKQFVVTRLLQRNVV-IELLDLAPNGVSFLGNVLHPAG-NIATFLLSSGLGRVADNHI 284

Query: 320 S 322
           S
Sbjct: 285 S 285


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 525 WNMAPXLISVCRFPLFTC*GIVVSMVLPGASSTTLTAMY 409
           W +   + +V  FP+F C  I+V  +LP  S T   +++
Sbjct: 568 WTVIYFIFNV-PFPVFLCYDILVETILPAGSQTLTDSVF 605


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +2

Query: 314 HISESYNKLLEAYVEDKTEKVRELSQMFKPGQYIAVSVVELAPGNTMLTTMPQ 472
           H+     K L+AY E+  E+ R+   +F P        +EL      LT  P+
Sbjct: 477 HLPGPLKKELDAYAEEYRERKRKRELVFLPNLGSVELEIELEDRTLTLTVTPE 529


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 140  SDEAQDYLKTHKLNNNLIFLSSKSLRPGIN 229
            +DEA   L    + NN IFL   +LRP ++
Sbjct: 911  ADEASRQLVWQAIENNEIFLDPHTLRPNVD 940


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +2

Query: 245 IHVSDVKIKVSMPCKLLGNVMACHISESYNKLLEAYVEDKTEKVRELSQMFKPGQ 409
           +H    +    M  +L G +M   +   Y++     +ED TE +  L   F+PGQ
Sbjct: 41  VHAIVTEETAPMALRLSGQLML-GVVRIYSRKARYLLEDCTEALMRLKMSFQPGQ 94


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 406 TRFEHL*QFTNFFSLIFNISFE*LIIRLADVTCHDIAQ*FARH 278
           +RF++   F  F S +F +  + L IRL  VT  D+A+    H
Sbjct: 99  SRFQYKLLFIVFLSNLFAVYLQSLCIRLGSVTGMDLARNCREH 141


>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +2

Query: 161 LKTHKLNNNLIFLSSKSLRPGINLLGRVIHVSDVKIKVSMPCKLLGNVMACHISES 328
           L+ HK     +FL S +  P I LL  +  VS +   +S+  +L  N++A H++ S
Sbjct: 142 LQQHKAKVFGLFLPSGTPTPLIPLLVLIEFVSYIARGLSLGIRLGANIIAGHLTMS 197


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/69 (21%), Positives = 30/69 (43%)
 Frame = +2

Query: 299 NVMACHISESYNKLLEAYVEDKTEKVRELSQMFKPGQYIAVSVVELAPGNTMLTTMPQHV 478
           N+ A  + ++  +L+E  V+  +   +  +    PGQ +    + L P   +       +
Sbjct: 641 NIAAGSLKDTSVRLVEGVVKILSSYRKVAANRLTPGQLVLPKNLVLLPILILAVLKSSAI 700

Query: 479 NSGKRHTDI 505
            SG  H+DI
Sbjct: 701 RSGSIHSDI 709


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 326 SYNKLLEAYVEDKTEKVRELSQMFKPGQYI 415
           S  K  E   E   EK+ +  Q+FKPGQ +
Sbjct: 50  SLRKSAETANEKFIEKINKEHQLFKPGQIV 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,284,986
Number of Sequences: 5004
Number of extensions: 42468
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)