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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A13
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo...   154   1e-38
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      56   5e-09
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    55   8e-09
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    53   5e-08
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    48   1e-06
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    46   4e-06
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    46   5e-06
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    46   7e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    45   9e-06
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    45   1e-05
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi...    44   2e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    43   4e-05
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    42   6e-05
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    42   8e-05
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    42   1e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    41   2e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    40   3e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    37   0.002
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    36   0.004
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    36   0.006
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    36   0.007
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    36   0.007
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha...    36   0.007
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    36   0.007
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    35   0.013
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    34   0.017
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    34   0.017
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    34   0.022
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    33   0.030
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    33   0.030
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    30   0.36 
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    30   0.36 
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    30   0.36 
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    29   0.64 
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    28   1.1  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    28   1.5  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    27   1.9  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    27   2.6  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   4.5  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   4.5  
SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ...    26   5.9  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   5.9  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.9  

>SPBC13A2.01c |||nuclear cap-binding complex small
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score =  154 bits (373), Expect = 1e-38
 Identities = 68/118 (57%), Positives = 91/118 (77%)
 Frame = +3

Query: 144 ISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKY 323
           +S Y  + FK      + + K S+ +Y+GNLSFYTTEEQIY L+S+CG+IRR+IMG+D++
Sbjct: 10  VSPYLIRRFKNDLRALDAV-KQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRF 68

Query: 324 KKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQV 497
            KTPCGFCFVEY+  +DA + ++YI+ T LD+RIIR D D G+ EGRQYGRG +GGQV
Sbjct: 69  TKTPCGFCFVEYFENQDALDSLKYISRTSLDERIIRADLDHGYEEGRQYGRGASGGQV 126


>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 56.0 bits (129), Expect = 5e-09
 Identities = 28/112 (25%), Positives = 58/112 (51%)
 Frame = +3

Query: 159 DQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPC 338
           D   +  R+++E +   + ++Y+GN+ +  T E++   ++ CG + RV +  DK+   P 
Sbjct: 39  DNETEALRNDKESI--DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPK 96

Query: 339 GFCFVEYYAREDAENCMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQ 494
           GF ++E+       N +  +NG+ L +R ++       + G   GRG+  G+
Sbjct: 97  GFAYIEFSEPSLVPNAL-LLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGR 147


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 55.2 bits (127), Expect = 8e-09
 Identities = 29/77 (37%), Positives = 45/77 (58%)
 Frame = +3

Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
           S+TL + NLS  T EE++ +L+ R G I+RV +  DK      GF FV YY R+ A    
Sbjct: 201 SATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKAR 260

Query: 390 RYINGTRLDDRIIRCDW 440
             ++G   ++ I+RC++
Sbjct: 261 DRLDGYGWNNLILRCEF 277


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 52.8 bits (121), Expect = 5e-08
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
 Frame = +3

Query: 192 EKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYARE 371
           ++L + S T+++GNLSF  TE+ +   +  CGDI+ + +  D       GF +V +   +
Sbjct: 359 DQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDID 418

Query: 372 DAENCMRYINGTRLDDRIIRCDWDAGFI-EGRQYGRGKTGGQ 494
            A+ C+  +NG  +  R  R D+       G + GRG  GG+
Sbjct: 419 SAKKCVE-MNGHFIAGRPCRLDFSTPRTGGGSRGGRGGFGGR 459


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 24/90 (26%), Positives = 43/90 (47%)
 Frame = +3

Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
           S++LY+G L    TE  ++EL++  G +  + +  D   +   G+ +V ++  ED E  +
Sbjct: 79  SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138

Query: 390 RYINGTRLDDRIIRCDWDAGFIEGRQYGRG 479
             +N T +  R  R  W       R+ G G
Sbjct: 139 DELNYTLIKGRPCRIMWSQRDPSLRKMGTG 168



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
 Frame = +3

Query: 165 HFKGSRSEQEKL--LKASST-LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTP 335
           H    R  Q K+  LKA+ T +YI NL    TE++  +L+ + G+I  + +  D+  K P
Sbjct: 242 HHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDK-P 300

Query: 336 CGFCFVEYYAREDAENCMRYIN 401
            GF FV Y   E A+  +  +N
Sbjct: 301 RGFGFVNYANHECAQKAVDELN 322


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 20/80 (25%), Positives = 41/80 (51%)
 Frame = +3

Query: 201 LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 380
           +  S  +Y+GN+ +   EEQ+ +++ + G ++   + +D     P G+ F EY+    A 
Sbjct: 1   MNPSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAA 60

Query: 381 NCMRYINGTRLDDRIIRCDW 440
           + +R +N      R +R D+
Sbjct: 61  SAVRNLNNYDAGTRRLRVDF 80


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 29/96 (30%), Positives = 46/96 (47%)
 Frame = +3

Query: 129 NSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIM 308
           +S    SS R      SRS +E L     T+ + NL+   T+E I E++   G I  + M
Sbjct: 75  SSRDSFSSNRSYSSSLSRSPEEPL----RTILVENLTRNVTKEHIAEIFGIYGLIDHIFM 130

Query: 309 GLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLD 416
            + K  +   G+C++EY   + A N +  +N   LD
Sbjct: 131 PIYKKSELNKGYCYIEYVYHDQAANAVDKMNNAELD 166


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 45.6 bits (103), Expect = 7e-06
 Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
 Frame = +3

Query: 120 DSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRR 299
           +++   +E S     H    +S           +++G LS  T + +I  L+   G +R+
Sbjct: 13  NTVQDQVEASVDAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRK 72

Query: 300 VIMGLDKYKK----TPCGFCFVEYYAREDAENCMRYINGTRLDDRII 428
           V +   + ++     P G  FV +  +ED +  +  +NG  LDDR I
Sbjct: 73  VTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREI 119


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 45.2 bits (102), Expect = 9e-06
 Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
 Frame = +3

Query: 162 QHFKGSRSEQEK---LLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKT 332
           Q  + + SEQE+   L+  +  L++ NL++   E+ +  L+   G + +V M +DK    
Sbjct: 303 QKAENNVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNN 362

Query: 333 PCGFCFVEYYAREDAENCMRYINGTRLDDRII 428
           P GF +++++  +DA      ++      R++
Sbjct: 363 PKGFAYIDFHDADDAVRAYLELDAKPFQGRLL 394



 Score = 32.3 bits (70), Expect = 0.068
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
 Frame = +3

Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTP-----CGFCFVEYYARED 374
           ++T+Y+ NL+F T +E+  +++         ++      K P      GF FVE+  +  
Sbjct: 618 TATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKAS 677

Query: 375 AENCMRYINGTRLD 416
           A   M  +NG  LD
Sbjct: 678 AVAAMHAMNGFVLD 691


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 19/80 (23%), Positives = 45/80 (56%)
 Frame = +3

Query: 201 LKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 380
           + A + +++GN+ +  +E+Q+ E++++ G ++   + LD    +  G+ F E++  E   
Sbjct: 3   MTAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTA 62

Query: 381 NCMRYINGTRLDDRIIRCDW 440
             +R +N + L  R IR ++
Sbjct: 63  MAVRKLNNSELGPRKIRVEF 82


>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 137

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 24/75 (32%), Positives = 40/75 (53%)
 Frame = +3

Query: 204 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 383
           + +S L+I NLSF  T E++Y+L+ R G +R++ +G     +   G  FV Y   +DA  
Sbjct: 9   EVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTR---GTAFVVYENVQDARR 65

Query: 384 CMRYINGTRLDDRII 428
               ++G    DR +
Sbjct: 66  ACEKLSGYNFMDRYL 80


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
 Frame = +3

Query: 126 MNSSIEISSYRDQHF-KGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRV 302
           MNS  +I    +Q   K   S   +    S+ +YIGNL F   E+ I  ++S  G+   +
Sbjct: 1   MNSIRQIERLNEQELDKPFSSSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDI 60

Query: 303 IMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDWDAGF 452
            +  DK      GF F++Y  +      +  +   +L DR++R D  A +
Sbjct: 61  NLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVDHVASY 110


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 20/73 (27%), Positives = 39/73 (53%)
 Frame = +3

Query: 213 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
           +T+Y+GNL    T+  ++EL  + G +  + +  D+ + +  GF F E+   +D E   +
Sbjct: 11  ATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQ 70

Query: 393 YINGTRLDDRIIR 431
            +N  +L  + IR
Sbjct: 71  ILNQVKLFGKPIR 83


>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 25/76 (32%), Positives = 40/76 (52%)
 Frame = +3

Query: 204 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 383
           +  +T+++GNL+   TE  +Y  +   G+I  V +   K K     + FVE+   EDA+ 
Sbjct: 3   RRKATVHVGNLAPSVTESLLYNAFIPFGEIISVALHR-KEKAVDRSYAFVEFDEPEDAKE 61

Query: 384 CMRYINGTRLDDRIIR 431
            M  +N + L DR IR
Sbjct: 62  AMENMNYSILCDRCIR 77


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = +3

Query: 183 SEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRV-IMGLDKYKKTPCGFCFVEY 359
           S Q    + SS L++GNL F TT+  + E + + G IRRV +M  +   K   GF FV++
Sbjct: 218 SIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCK-GFGFVDF 276

Query: 360 YAREDAENCMR 392
               D + CM+
Sbjct: 277 ---PDIDTCMK 284



 Score = 28.7 bits (61), Expect = 0.84
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 171 KGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSR 281
           K     QE+  ++   +++GNLSF+TT+E + + + R
Sbjct: 91  KEEGESQEESKRSPWGIWVGNLSFHTTKEILTDFFVR 127


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +3

Query: 219 LYIGNLSFYTTEEQIYEL-YSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 395
           L I NL +   + Q  E  +S+ G +R + +   K     CGF FV    R+ AE  M  
Sbjct: 109 LIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPT-KGGGRMCGFAFVWMKDRKAAEEAMNS 167

Query: 396 INGTRLDDRIIRCDW 440
           +NGT +D R I  DW
Sbjct: 168 LNGTEIDGRPIAVDW 182


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 25/78 (32%), Positives = 42/78 (53%)
 Frame = +3

Query: 207 ASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 386
           A+ST+++G LS + +EE++  L+   G+I  V +   K     CG  FV++  R+ AE  
Sbjct: 301 ANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGK----GCG--FVQFVNRQSAEIA 354

Query: 387 MRYINGTRLDDRIIRCDW 440
           +  + G  L +  IR  W
Sbjct: 355 INQLQGYPLGNSRIRLSW 372



 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 19/73 (26%), Positives = 40/73 (54%)
 Frame = +3

Query: 183 SEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYY 362
           S +++ +   +TL++G L  + TE  I ++++  G   +V +  ++Y     G+CFVE+ 
Sbjct: 83  SSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFA 142

Query: 363 AREDAENCMRYIN 401
           +  +A + M   N
Sbjct: 143 SPHEASSAMSMNN 155


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 18/77 (23%), Positives = 40/77 (51%)
 Frame = +3

Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 389
           S  +Y+GNL + T++  + +L++  G + R  +  +   ++  GF  V++    DA + +
Sbjct: 279 SDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSK-GFGVVQFENENDAASSI 337

Query: 390 RYINGTRLDDRIIRCDW 440
             +NG R   R ++  +
Sbjct: 338 EKLNGYRYGGRPLQLSY 354



 Score = 31.1 bits (67), Expect = 0.16
 Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
 Frame = +3

Query: 156 RDQHFKGSRSEQE-------KLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRV-IMG 311
           R  HF G  +E++       K  +    +Y+GNLS+     ++ E   + G++    I+ 
Sbjct: 40  RGLHFDGEHTERDPHLGNGQKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILN 99

Query: 312 LDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRII 428
           L       C    +EY   E+A   ++ ++  +   R++
Sbjct: 100 LPNGLSKGC--AIIEYSTAEEARTAIKTLSNQKFMGRLV 136


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 19/70 (27%), Positives = 38/70 (54%)
 Frame = +3

Query: 249 TEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRII 428
           TEEQ+ +L++  G ++ + + LD+      G+  +EY   E A+  +   N + LD+++ 
Sbjct: 22  TEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLDEKL- 80

Query: 429 RCDWDAGFIE 458
             + D  F+E
Sbjct: 81  --EVDFAFLE 88


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
 Frame = +3

Query: 99  YKMKRSYDSMNSSIEISS--YRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYEL 272
           Y + R   S  S++ ++   + D+H +               +++GNL+F   EE ++  
Sbjct: 230 YIVFRDSSSARSALSLNGTMFMDRHLRVDSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRY 289

Query: 273 YSRCGDIRRVIMGLDKYKKTPCGFCFVEY 359
           +  CG I  V +  D       GF ++++
Sbjct: 290 FGDCGSIDYVRIVRDPKTNLGKGFAYIQF 318


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = +3

Query: 198 LLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDA 377
           +L +   +YI NL     E+Q+ EL    GD+    +  +    +  GFCF E+    DA
Sbjct: 305 VLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDA 364

Query: 378 ENCMRYING 404
           E  +  ++G
Sbjct: 365 EVAISGLDG 373


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = +3

Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 398
           L + N+ F  T+E +  ++   GDI  V +  D   ++  GF +++Y     A N +  +
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSK-GFGYIQYRNPISARNALEKM 400

Query: 399 NGTRLDDRIIR 431
           NG  L  R +R
Sbjct: 401 NGFDLAGRNMR 411


>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 20/99 (20%), Positives = 47/99 (47%)
 Frame = +3

Query: 138 IEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLD 317
           +++    ++  K   SE + L K    LY+G L     E+Q+   +S+ G + R+ M  +
Sbjct: 80  MDLGEDAEKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRN 139

Query: 318 KYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRC 434
           +   +   + F+E+ + + A      ++   L  ++++C
Sbjct: 140 RKTGSSKHYAFIEFESLDVANVVAETMHNYLLYGKLLQC 178


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
 Frame = +3

Query: 75  IIEK*EQVYKMKRSYDSMNSSIE-------ISSYRDQHFKGSRSEQEKLLKASSTLYIGN 233
           I +K    YK KR+    NSS +       +   +D H + +  ++ +  +    + + N
Sbjct: 32  ISKKSRLTYKFKRASKEHNSSPDDGPWQHDLDQEQDAHPRTTHLQKRQHSENRFGVRVEN 91

Query: 234 LSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRL 413
           L +   E+ +  L+     IR VIM  D+  ++  G C V +   +DAE+  + +  T L
Sbjct: 92  LHYQVLEKDVLSLFENFHPIR-VIMNYDRAGRSE-GSCDVYFETSQDAEDAQKTLQSTNL 149


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 34.7 bits (76), Expect = 0.013
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +3

Query: 213 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
           + L++  L+  T +E +  ++SR G I    +  DK       + F+E+  +E  E    
Sbjct: 244 NVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYF 303

Query: 393 YINGTRLDDRIIRCDWDAGFIEGRQY 470
            +    +DD  I  D+       RQY
Sbjct: 304 KMQNVLIDDSRIHVDFSQSVARYRQY 329


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
 Frame = +3

Query: 171 KGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRV-IMGLDKYK----KTP 335
           K S   +    K   ++Y+GNL        ++EL+   G+  +  ++   K K    K+P
Sbjct: 6   KLSEKNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSP 65

Query: 336 CGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDW 440
             F F+ +  +  A+N +  +NG+      ++ ++
Sbjct: 66  TLFAFITFENKCSADNAIASLNGSSFQGNTLKVEY 100


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = +3

Query: 213 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
           +T+Y+GNLS    E+++   +S+    RR+   +    K     CFVE+     A   M 
Sbjct: 602 NTIYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKI----KGNSPMCFVEFEEVCHAAKAME 657

Query: 393 YINGTRLDDRI 425
            + G  LDD+I
Sbjct: 658 KMQGAALDDKI 668


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 33.9 bits (74), Expect = 0.022
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
 Frame = +3

Query: 108 KRSYDSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCG 287
           KR Y+S ++    S  R++  K   SE       +  +YI  L    T ++I E++ +CG
Sbjct: 75  KRLYESTSAEGYPSGSRNKKSKSENSEASPAPVINKAVYIQGLPLDVTVDEIEEVFKKCG 134

Query: 288 DI-RRVIMGLDKYK------KTPCGFCFVEYYAREDAE 380
            I + +  G  + K       TP G   + ++  E  E
Sbjct: 135 VIAKNIDNGTPRIKIYRTEDGTPKGDALIVFFRSESVE 172


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 33.5 bits (73), Expect = 0.030
 Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
 Frame = +3

Query: 144 ISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKY 323
           ++ +R      +  + +    AS  L++ NL        + EL+S+ GD++    G+D  
Sbjct: 172 VTGFRSSSLNSNSDDIDIFSHASRYLFVTNLPRIVPYATLLELFSKLGDVK----GIDTS 227

Query: 324 KKTPCGFCFVEYYAREDAENCMRYINGTR-LDDRII 428
             +  G C V ++    A    + +   R  +DR++
Sbjct: 228 SLSTDGICIVAFFDIRQAIQAAKSLRSQRFFNDRLL 263


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 33.5 bits (73), Expect = 0.030
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +3

Query: 180 RSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 359
           R EQEK  K    +++G +    TEE+    +++ G +    + +DK    P GF FV Y
Sbjct: 240 REEQEKTAK----MFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTY 295

Query: 360 YAREDAENCM 389
                 E  M
Sbjct: 296 ENESAVEATM 305



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/82 (17%), Positives = 38/82 (46%)
 Frame = +3

Query: 114 SYDSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYIGNLSFYTTEEQIYELYSRCGDI 293
           +Y+   S++  S   + + + +  E     +    ++IG L++ TT++ + + + + G++
Sbjct: 131 NYNENQSALTGSGAMESN-EDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEV 189

Query: 294 RRVIMGLDKYKKTPCGFCFVEY 359
               +  D       GF F+ +
Sbjct: 190 LDCTVMRDSTTGRSRGFGFLTF 211


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +3

Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGL 314
           SST+Y+GN+    ++E+I + +S+ G +  +   L
Sbjct: 16  SSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRL 50


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 14/76 (18%), Positives = 34/76 (44%)
 Frame = +3

Query: 213 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
           + + + N+ F   ++ + + + + G  R              G  F  +Y  E+A+  ++
Sbjct: 202 TAIVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQ 261

Query: 393 YINGTRLDDRIIRCDW 440
            +NG  ++ R +R +W
Sbjct: 262 TLNGYEINGRRLRVEW 277


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 14/76 (18%), Positives = 35/76 (46%)
 Frame = +3

Query: 213 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
           + + I N+ F   +E ++++++     R              G  F  +++ E+A+  ++
Sbjct: 232 TAIVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEEAKTVVQ 291

Query: 393 YINGTRLDDRIIRCDW 440
            +NG  +  R +R +W
Sbjct: 292 VLNGYEITGRRLRVEW 307


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +3

Query: 216 TLYI-GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
           TLY+ G        E  YE +   G + R  + + +  +T   F FVEY    DAE+   
Sbjct: 8   TLYVTGFRDGMRARELAYE-FEPFGPLIRCDIPIPR-TRTSRPFAFVEYEDSRDAEDAYY 65

Query: 393 YINGTRLD--DRIIRCDW 440
            ++G RL+    ++R +W
Sbjct: 66  EVHGRRLERGGGVLRVEW 83


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = +3

Query: 213 STLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 392
           +T+Y+GNL   T+EE++  L+S     +R+        K     CFVE+     A   ++
Sbjct: 426 NTIYVGNLPPSTSEEELKVLFSTQVGYKRLCF----RTKGNGPMCFVEFENIPYAMEALK 481

Query: 393 YINGTRLDDRI 425
            + G  L   I
Sbjct: 482 NLQGVCLSSSI 492


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +3

Query: 219 LYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAR 368
           +++ N+S   T EQ+   +   G++  + + L+ Y  T  G C + +  R
Sbjct: 96  VFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKR 145


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +3

Query: 204 KASSTLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYK--KTPCGFCFVEYYAREDA 377
           K S TL++G+L  +     I +L++   +   V +   K    +T   +CFV++ +   A
Sbjct: 82  KMSDTLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAA 141

Query: 378 ENCMRYINGTRL 413
           E  +   N T +
Sbjct: 142 ERALMKYNNTMI 153


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/72 (25%), Positives = 34/72 (47%)
 Frame = +3

Query: 216 TLYIGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 395
           T ++GNLSF  TE  + + +     +  + + +D   +   GF +VE +   D  +    
Sbjct: 95  TAHVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVE-FETADTLSAALA 151

Query: 396 INGTRLDDRIIR 431
           ++G  L  R +R
Sbjct: 152 LSGEDLMGRPVR 163


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 551 YFSITATPTVIVSSIFISNLASCFATTVLSTFNESSIPVTANYSV 417
           Y + T+TP   ++S   S + S  ATTV +T    ++  T  Y+V
Sbjct: 183 YHNSTSTPPPTITSTKASTVTSTEATTVTTT-TAVTVTATETYTV 226


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 192 EKLLKASSTLY-IGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAR 368
           EK LK  S  + +G+  FY T     + ++R   +RR     +  K   C FC    +AR
Sbjct: 9   EKPLKKRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFC-NRAFAR 67

Query: 369 EDAEN 383
            D  N
Sbjct: 68  SDVLN 72


>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 210 SSTLYIGNLSFYTTEEQIYELYSRCGDIRRV 302
           S+ + + N+S   TE+QI + +S CG +  +
Sbjct: 2   SNQVIVTNISPEVTEKQISDFFSFCGKVSNI 32


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -1

Query: 306 LLLFLYRRIVNTVHKFALLLCKMKGFQCKALTKLLVIFLVRF 181
           L+LF++R+ V  +  F  L   +  + C+   KL++  ++RF
Sbjct: 791 LILFIFRKCVIGIKSFEKLQSYVFTYYCERYPKLILKRVLRF 832


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 185 RTRKITKSFVNALHWKPFILH 247
           + +K+T  +VN+L WK +I H
Sbjct: 416 KNKKVTFVWVNSLQWKTWISH 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,793
Number of Sequences: 5004
Number of extensions: 54954
Number of successful extensions: 197
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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