Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0023
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   1.4  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   5.5  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   7.2  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    25   9.5  

>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 161  LLGSWYIRMTLPSPFSFSNQSRKSVKADISDFVLRIL*ETI 39
            LL S+YI+  L   + FS Q  +   A+  DFV +I  ET+
Sbjct: 923  LLESFYIQFPLLELYKFSCQQLQDYIAEGKDFVTKIEEETL 963


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 490 TGLAHTLAVSTMSLLAERLSPEALTSCCS 404
           T L H+ A ST S   ER+ P+  + C S
Sbjct: 603 TSLMHSAASSTPSYNGERIVPDVPSPCIS 631


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 360 RATAAYKIVEHLAQGEQQEVSASGESLS-ASKDMVETAR-VWAR 485
           RA    +  E LA G+Q EV   G SLS   K  +  AR V++R
Sbjct: 680 RACCLLRDFEILADGDQTEVGEKGISLSGGQKARISLARAVYSR 723


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
            2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 396  AQGEQQEVSASGESLSASKDMVETARVWARPVHTE 500
            AQG+ QEV +  E ++  +D++   R   +P  T+
Sbjct: 913  AQGDTQEVKSKKEGMAIVRDIMRQWRSNVKPEMTQ 947


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,054,509
Number of Sequences: 5004
Number of extensions: 36816
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)