Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0039
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   4.7  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   4.7  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    24   8.1  
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    24   8.1  

>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = -2

Query: 163 DFTSR-----VSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSG 41
           DF+SR         + + RRR P  SRR +       RA ++R SG
Sbjct: 5   DFSSRSLFLEAKEEEYKQRRRVPLDSRRRVRRACLSCRAKKIRCSG 50


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 312 PNVRNCGSSRTEQYYYRNDKPSVG 383
           P V N GSSRT+ +Y R    + G
Sbjct: 86  PRVINLGSSRTDWFYERKKFKNAG 109


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 161 LY*SRFAFKTR-DATSKPIWIAEIDAIGFFLNTCI 60
           LY  +F    R  ATS  I + EID  G+F N+ +
Sbjct: 467 LYYKKFVEAIRASATSMAIALEEIDEYGYFHNSFV 501


>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 96  LRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDS 224
           L  P+G R  VS    + +++K+ C   P SRG TV    PD+
Sbjct: 6   LSSPSGAR--VSSVTVKNKVLKTPCFFLPTSRG-TVPHLTPDN 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,688,832
Number of Sequences: 5004
Number of extensions: 32208
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)