Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0038
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    32   0.063
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   2.4  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   3.2  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    26   3.2  
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    26   4.2  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    26   4.2  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    25   5.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   5.5  
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.3  

>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 31.9 bits (69), Expect = 0.063
 Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
 Frame = -1

Query: 320 ASEVVNF-DESG*LLQIAWSSTGTHLSNVCLINFRW*F---LRLPWLSRVTGNQGSIPER 153
           + E+++F ++S  L+++   S+ + ++  C+IN  W     LRL +L +   NQ S  E+
Sbjct: 243 SKEIIDFLEKSKTLVELGMDSSCSLVAE-CMINETWPVDRALRLQFLIQQRNNQSSNEEQ 301

Query: 152 EPEKRLP 132
           + EKR+P
Sbjct: 302 KQEKRVP 308


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 203 LPWLSRVTGNQGSIPEREPEKRLPHPRKAAGAQITHSRHGEVVTKN 66
           +P +S V  +   IPER+  + L  P       + H    EVV +N
Sbjct: 757 VPCISGVMLHSKIIPERKNSEFLSFPTSQQECLLVHDNQAEVVVQN 802


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +1

Query: 25  LIPITRPRKSPVSLFFVTTSPCREWVICAPAAFL 126
           +IPI +  KS +SL F+T SPC  + IC+  A L
Sbjct: 45  IIPIAQ--KSNISLPFLTLSPC-SFTICSLRARL 75


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 275 IAWSSTGTHLSNVCLINFRW*FLRLPWLSRVT 180
           + W   G + + +CL+NF+   L   W+S ++
Sbjct: 367 VLWCPYGKNKTLICLLNFQSSLLSFEWISIIS 398


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 211 NYHRKLIRQTFERCVPVLDHAICKSYPD 294
           +YH K IR T     P     IC+ Y D
Sbjct: 213 SYHYKCIRPTLNESHPYFSCFICRKYHD 240


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 123 PWMW*PFLRLPLRNRTLIPRYP*QPW*SQKLPS 221
           P MW      P  N+ +   YP +PW S+ LPS
Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 125 LDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 226
           L ++  S+   P + PD P   T+  V+ TT+E+
Sbjct: 422 LGLINTSEINQPANLPDEPTAETSNPVSATTVEA 455


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 247  RCVPVLDHAICKSYPDSSKLTTSDARPSV 333
            +C PV+   I KSYP +   T   AR  +
Sbjct: 3080 KCAPVVLKKIAKSYPQALFFTLRTAREDI 3108


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -3

Query: 471 NGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSD 367
           N  IY+ +F  ++S++ + + I  L   +RT++SD
Sbjct: 14  NTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSD 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,490
Number of Sequences: 5004
Number of extensions: 46529
Number of successful extensions: 101
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)