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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20024
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    29   0.47 
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    29   0.83 
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    27   3.3  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   4.4  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   5.8  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   5.8  
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    26   5.8  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      25   7.7  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   7.7  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    25   7.7  

>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 508 DLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVV 407
           DLE N +V Q+ G   G+FL G  FG  +  FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 639 FVHGGLKVPVVFEGVSGAITVDDTVIT 559
           F H  +    V  G+ GAIT+DD++IT
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSIIT 133


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 120 ELYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 236
           ++++++V+  Y   A+    EYL+EK    I +  K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 202 SPFFSFRYSEHLAIAVSYSPMTTLIYSSPP 113
           +PFF   +S HL    S S  + + YS PP
Sbjct: 343 APFFPLGFSPHLNDESSRSRWSNISYSPPP 372


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 356 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 448
           L+ K+D  A K+ DQ  H K+     +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = +2

Query: 470 TPVLENNRVYFKICPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTL 622
           +P   NN VY    PPR N T +     VL    S        PSN+  TL
Sbjct: 313 SPPKPNNPVYL---PPRGNPTVNDRVSNVLPSITSFDSSVTTVPSNSPATL 360


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 433 QRQNQQESLLEVYPRVGKQQSLLQDLSTEDKQYLKLDNTKGSSDDRI 573
           +RQN Q+ L EV   V + QSL+ + + +  +  +L       ++RI
Sbjct: 148 ERQNHQQQLEEVLATVDQLQSLVTNFNDQQDEVDELRERITLKEERI 194


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 210 KEAVKRLIENGKRNTWTSPTSY 275
           +E+++R+ +    N+W+SP SY
Sbjct: 318 RESLQRIYQKLTSNSWSSPVSY 339


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 406  VLLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 290
            V+L+  + G +  +   L  LL +D +++  +V FDDF+
Sbjct: 1284 VVLLQDIHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
 Frame = +1

Query: 379 RPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDLSTEDKQYLKLDNTKGS 558
           RP V  P++P+ + +  L+     +   + +  +G+    + D + E  +    +     
Sbjct: 28  RPTVSMPSQPESSAM--LEDDGMVKR--KPFAAIGEAIPKVIDTTGESVREAFEEFLLSF 83

Query: 559 SDDRIIYGDSTADTFKHHWYLEP----SMYESDVMFFVYNR--EYNSV 684
           SDDR+  GD+     +  +Y++     +MYE   ++  Y     YN V
Sbjct: 84  SDDRVAGGDALPSASQEKYYVQQIHGLAMYEIHTVYVDYKHLTSYNDV 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,276
Number of Sequences: 5004
Number of extensions: 59897
Number of successful extensions: 260
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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