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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0008
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   136   3e-33
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   132   3e-32
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    29   0.36 
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    26   3.4  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    25   7.8  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   7.8  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    25   7.8  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  136 bits (328), Expect = 3e-33
 Identities = 68/100 (68%), Positives = 77/100 (77%)
 Frame = +3

Query: 255 ENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 434
           ENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+IV DP 
Sbjct: 72  ENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPR 131

Query: 435 QDHQPITEASYVNIPVIALCNTDSP*DLWTLLSHATPSLP 554
            D Q I EAS+VNIPVIALC+TDS      +L+H   ++P
Sbjct: 132 ADAQAIKEASFVNIPVIALCDTDS------ILNHVDVAIP 165



 Score = 67.3 bits (157), Expect = 1e-12
 Identities = 26/51 (50%), Positives = 40/51 (78%)
 Frame = +1

Query: 70  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 222
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEK
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEK 60



 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 509 LRFVDIAIPCNTKSSHSIGL 568
           L  VD+AIP N K   SIGL
Sbjct: 157 LNHVDVAIPINNKGYKSIGL 176


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  132 bits (319), Expect = 3e-32
 Identities = 65/101 (64%), Positives = 77/101 (76%)
 Frame = +3

Query: 255 ENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 434
           ENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL++V DP 
Sbjct: 71  ENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPR 130

Query: 435 QDHQPITEASYVNIPVIALCNTDSP*DLWTLLSHATPSLPT 557
            D Q I EAS+VNIPVIALC+TDS      +L+H   ++PT
Sbjct: 131 ADAQAIKEASFVNIPVIALCDTDS------ILNHVDIAIPT 165



 Score = 67.3 bits (157), Expect = 1e-12
 Identities = 25/55 (45%), Positives = 42/55 (76%)
 Frame = +1

Query: 58  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEK 222
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEK
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEK 59



 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +2

Query: 509 LRFVDIAIPCNTKSSHSIGL 568
           L  VDIAIP N K   SIGL
Sbjct: 156 LNHVDIAIPTNNKGRKSIGL 175


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 405 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDS 506
           P L+++L+P ++     EA   ++P I + +TD+
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDA 213


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 473 HSCDCFVQHRLPLRFVDIAIPCNT 544
           HS D + Q+ +P R +++A  C T
Sbjct: 176 HSKDDYAQYMIPFRDINVATSCRT 199


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -3

Query: 201 VDHMGTISTSFVDIGLHLEVNIFCPKMGGCSKHF-GDIFLVEGEHV*SSRH 52
           VD+ G I  S   I   LE+N    K GG    F G  F +  E V  + H
Sbjct: 530 VDNKGKIKISDFGISKKLELNSTSTKTGGARPSFQGSSFWMAPEVVKQTMH 580


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 161  MSTNDVLMVPM*STCVVPGKNLFWLLVL 244
            M+ N V  + +  T   PG N FW L++
Sbjct: 920  MTLNPVFQIGLNGTTHSPGNNSFWPLII 947


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 406 GSRNAAWIWLVKAPGVKRPAIGVAPVCAA 320
           G+ +A W WL+   G    A+ VA + +A
Sbjct: 92  GAPSAVWCWLIAGAGCMCIALSVAELVSA 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,561,948
Number of Sequences: 5004
Number of extensions: 54484
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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