Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0001
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.66 
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    27   2.6  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.5  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    26   6.1  

>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 172 IIYFESLNFNNYFVASCCDATPHTDEAWSLGRGSF 276
           I+YF+ + +N +         P T EAW LG   F
Sbjct: 486 IVYFKGMPYNEHNYKELDSFEPITKEAWMLGNSCF 520


>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
 Frame = -3

Query: 330 YRTEIVNCLGQNQPHCVSKRATSQRPGLVRMRCGIAAASYKIIIKVKRLEINNKL-LSYT 154
           Y   I +CL        +     +R G      G+AA+ +  ++K    EI  K  L   
Sbjct: 329 YTASIFSCLTALLSRVPADELKGKRVGAYSYGSGLAASFFSFVVKGDVSEIAKKTNLVND 388

Query: 153 LKNRSRAPSRGTVPSADRQYEINNVLKANFTETTARRRIASG 28
           L NR          + + +++ +  LK NFT   +  R+ SG
Sbjct: 389 LDNRHCLTPTQYEEAIELRHQAH--LKKNFTPKGSIERLRSG 428


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 582 FVPPRRSS*TCLAFR*LFFRTHS 650
           FVPP+RSS +C+ +  LF  ++S
Sbjct: 174 FVPPKRSSSSCVTYVCLFLDSNS 196


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 639 EKTIT*TPNRFKMTASAARKKKIILSRQVERGEEAT 532
           ++TI  TP+  +MT    +KKK   S+ V R E++T
Sbjct: 580 QETIRSTPSGMEMTFKVEKKKK---SKPVNRDEDST 612


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,791,878
Number of Sequences: 5004
Number of extensions: 52644
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)