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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0038
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...   148   2e-37
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    29   0.19 
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    26   1.8  
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    24   5.4  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    24   7.1  
SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyce...    24   7.1  
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    23   9.4  
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    23   9.4  
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    23   9.4  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    23   9.4  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    23   9.4  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score =  148 bits (359), Expect = 2e-37
 Identities = 68/112 (60%), Positives = 92/112 (82%)
 Frame = +2

Query: 2   MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 181
           MKF++ VTSSRRK RK HF APS +RRVLMS+PLSKELR+++ ++S+P+R+DD++ V+RG
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRG 60

Query: 182 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMN 337
             KG++ GK+  VYRKKF++ IER+ REKANGA+A VGI  SK VI KL ++
Sbjct: 61  SNKGRE-GKITSVYRKKFLLLIERVTREKANGASAPVGIDASKVVITKLHLD 111


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 29.1 bits (62), Expect = 0.19
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -1

Query: 289 ICCCTIGLFSLNPLNVYNKLFTIHLHHFA---NLLAFVVSTYNLNFIVFANRH 140
           + C +I LFS  PL+  N+ F I+L  F+    L   ++ST  + F  F  RH
Sbjct: 825 LTCISIPLFSFEPLSKKNR-FLINLFRFSFSFILYNLLISTSTVFFAGFFRRH 876


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 171 LYVDTTKANRLAK*CRCIVKSLLYTLRGF 257
           LY D  +    A+ C C+V++LLY  R F
Sbjct: 78  LYHDNHERKMSAQSCACMVRTLLYGKRFF 106


>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -1

Query: 274 IGLF--SLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFIVF 152
           I LF  ++N  N++ K F+   +H AN + F  +  N  +++F
Sbjct: 181 ISLFIATINCENIFWKAFSPTTYHIANGVQFEGAVINFVYVMF 223


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 83  VLMSSPLSKELRQKFNVKSMPIRKDD 160
           + M SPL KE+  ++    +  RK+D
Sbjct: 34  ISMKSPLEKEIANEYEALKVTERKED 59


>SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 168

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 184 VSTYNLNFIVFANRHGFYIEFLS*FLR-QGRGHQHSPYM 71
           ++ Y LNF  + +R G Y+E L  ++R Q RG  +  Y+
Sbjct: 69  MAIYFLNFSTWTSRVGIYLEDL--YVRPQFRGKGYGSYL 105


>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 244 H*EDSKRKGQWCNSICRHSPFKVCDC 321
           H   ++  G WCN+ C  S    C C
Sbjct: 181 HATSNEFPGLWCNNECIPSSIPNCAC 206


>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 65  PSHIRRVLMSSPLSKELRQKFNVKSMP 145
           P H+R  ++ SPL     Q FN ++ P
Sbjct: 351 PKHLRHSIVESPLLYGQDQYFNGENAP 377


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 212 SLCQPVGLCSVHVQPELHRLCE 147
           +LCQ  GL ++H   E   +C+
Sbjct: 755 ALCQEAGLIAMHEDLEAKEICQ 776


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -3

Query: 176 VQPELHRLCE*AWILH*IFVLVP*TGERTSTLALYVKE 63
           + P+LH +   A + + +  ++P T E+T ++  +VKE
Sbjct: 737 IYPQLHSIDYQAPVANALQNIIPFTYEKTESIEEFVKE 774


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/13 (61%), Positives = 13/13 (100%)
 Frame = +3

Query: 156 TMKFRLYVDTTKA 194
           T++FRLY+D++KA
Sbjct: 657 TVRFRLYLDSSKA 669


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,414,812
Number of Sequences: 5004
Number of extensions: 28483
Number of successful extensions: 86
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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