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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0106
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...    65   7e-12
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    31   0.11 
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    30   0.25 
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...    30   0.33 
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...    29   0.76 
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.3  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   3.1  
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    26   5.3  
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma...    25   7.1  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   9.3  

>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 65.3 bits (152), Expect = 7e-12
 Identities = 34/74 (45%), Positives = 43/74 (58%)
 Frame = +2

Query: 38  FARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRL 217
           F RYVE GRV LV  G   GKL  +VD++D  RAL+D P S  PRQ IR   + LT   +
Sbjct: 4   FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVM 63

Query: 218 KYAFTAPTRLVRKR 259
           K    A + +V K+
Sbjct: 64  KLPRGARSGIVAKK 77



 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +1

Query: 259 WTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFK-LTAARVKRNRARTAVFKSLK 423
           W    +  KW  S WA+KL  K+ R+Q+ D+DRF  +   + +R +   AV K+LK
Sbjct: 78  WKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQVNVAVAKALK 133


>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 226 VHSPYSSCEEAWTDAKLNEKWTESQWA 306
           VH PY+S E+A+ D  +N+K  E  W+
Sbjct: 135 VHHPYTSLEQAFHDGIINQKQLEFAWS 161


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -2

Query: 351 VICHLCALLFVR*LLGPLTFCPFFIEFSICPRFLTRRVGAVN 226
           V+C  CAL  +R    P+ FCP  ++F+  P+FL    G V+
Sbjct: 508 VVCRTCALSRMRGR--PVGFCPLQLDFNNWPKFLCCLQGFVS 547


>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 44  RYVEPGRVALVADGPLKGKLVSVVDVIDQ 130
           + ++PG+VAL+  G   GK V ++  IDQ
Sbjct: 3   KILKPGKVALITRGRFAGKKVVILQAIDQ 31


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 44  RYVEPGRVALVADGPLKGKLVSVVDVIDQ 130
           + ++PG+VALV  G   GK V ++  +DQ
Sbjct: 3   KILKPGKVALVTRGRFAGKKVVILQNVDQ 31


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 187 KPTPSHKIPPQIRVHSPYSSCEEAWTDAKLN 279
           KP P+ ++ PQ  ++SP  S E    + KL+
Sbjct: 377 KPKPAKELSPQATLNSPIQSAEAGNVELKLH 407


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +1

Query: 250 EEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTA 405
           E A  + +  E+  E++  +KLA +EKR +  +    K    R+++ RA+ A
Sbjct: 707 ERAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYA 758


>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +2

Query: 56  PGRVALVADGPLKGKLVSVVDVIDQTRALVDGP--GSGVPRQQI 181
           PG V ++  G  +GK V V+  ++ T  +V GP   +GVP +++
Sbjct: 54  PGTVCILLAGRFRGKRVVVLSQLEDT-LVVTGPYKVNGVPIRRV 96


>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 441 STLSLXLQALEYGSPGTVPLNSCSC*LEPIVICHLCAL 328
           STLS+ L  L+Y +P  +   S SC       C L AL
Sbjct: 122 STLSIVLTILKYLAPAYIRQWSISCLTTSTAACLLLAL 159


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 141 WLMDPAVEYLGNRSA*TNSISQNSASNTRSQPLL 242
           ++ D AV Y  N+    NS++ ++A N  S PL+
Sbjct: 132 YMPDSAVAYNPNQDQFGNSVNVSAACNNVSAPLI 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,190,332
Number of Sequences: 5004
Number of extensions: 42466
Number of successful extensions: 114
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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