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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a06
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...   247   1e-66
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i...   211   9e-56
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans...   184   1e-47
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr...   183   2e-47
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans...   150   2e-37
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...   122   5e-29
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...   109   4e-25
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    88   1e-18
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    62   1e-10
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    28   1.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.2  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    27   2.9  
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    27   2.9  
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p...    27   3.8  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    27   3.8  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    26   5.0  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    26   6.6  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    26   6.6  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    26   6.6  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   8.7  

>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score =  247 bits (605), Expect = 1e-66
 Identities = 113/158 (71%), Positives = 125/158 (79%)
 Frame = +1

Query: 49  FFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGD 228
           FFDV  +  PLG+IV +L  DV PKT  NFRALCTGEKG+GY GS FHRVIP FMLQGGD
Sbjct: 5   FFDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQGGD 64

Query: 229 FTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRH 408
           FT  NGTGGKSIYG KF DENF LKH  PG+LSMANAG +TNGSQFFITTV T WLDG+H
Sbjct: 65  FTRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKH 124

Query: 409 VVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQI 522
           VVFG V EGM+VVK++E+ GS SG T  RIVI  CG +
Sbjct: 125 VVFGEVTEGMDVVKKVESLGSNSGATRARIVIDKCGTV 162


>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score =  211 bits (515), Expect = 9e-56
 Identities = 97/147 (65%), Positives = 112/147 (76%)
 Frame = +1

Query: 16  ANTGKMSLPRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHR 195
           AN G      V+FD+   D  LG++ I L     PKT ENFRAL TGEKGFGY+GSIFHR
Sbjct: 19  ANRGPKVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHR 78

Query: 196 VIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFIT 375
           VIPNFM+QGGD T  +GTGGKSIYG++F DENF L H  PG+LSMANAG D+NGSQFFIT
Sbjct: 79  VIPNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFIT 138

Query: 376 TVKTSWLDGRHVVFGNVVEGMEVVKQI 456
           TVKT WLDG HVVFG V+ G ++VK+I
Sbjct: 139 TVKTPWLDGHHVVFGEVLSGYDIVKKI 165


>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score =  184 bits (448), Expect = 1e-47
 Identities = 89/169 (52%), Positives = 115/169 (68%), Gaps = 8/169 (4%)
 Frame = +1

Query: 40  PRVFFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGE------KGFGYKGSIFHRVI 201
           P VF D+ +D   LG+I I L S + PKT ENFR  CTGE      K  GYK S FHR+I
Sbjct: 5   PVVFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNSTFHRII 64

Query: 202 PNFMLQGGDFTNHNGTGGKSIYGNK-FEDENFTLKHTGPGVLSMANAGADTNGSQFFITT 378
             FM+QGGDF + +GTG  +I+ ++ F DENFTLKH  PG+LSMANAG D+NG QFFITT
Sbjct: 65  QGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITT 124

Query: 379 VKTSWLDGRHVVFGNVVEGMEVVKQIE-TFGSQSGKTSKRIVIKDCGQI 522
           V   +LDG+HVVFG V+EG ++VK+IE T    + +    + I +CG++
Sbjct: 125 VPCDFLDGKHVVFGEVIEGYDIVKEIESTPVGANSRPKSNVAIVECGEM 173


>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score =  183 bits (446), Expect = 2e-47
 Identities = 90/160 (56%), Positives = 111/160 (69%), Gaps = 4/160 (2%)
 Frame = +1

Query: 49  FFDVTVDDAPLGKIVIELRSDVTPKTCENFRALCTGEKGFG----YKGSIFHRVIPNFML 216
           +F +++D      I  EL  +V PKT +NF +LC G +  G    YKGS FHRVI NFML
Sbjct: 6   YFKISIDGKIQPTIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNFML 65

Query: 217 QGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWL 396
           QGGDFT  NGTGG+SIYG KFEDENF LKH  P +LSMANAG +TNGSQFFITTV T  L
Sbjct: 66  QGGDFTRGNGTGGESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHL 125

Query: 397 DGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCG 516
           DG+HVVFG V++G   V+ IE   +++      +VI++CG
Sbjct: 126 DGKHVVFGKVIQGKSTVRTIENLETKNDDPVVPVVIEECG 165


>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score =  150 bits (364), Expect = 2e-37
 Identities = 74/127 (58%), Positives = 94/127 (74%), Gaps = 1/127 (0%)
 Frame = +1

Query: 79  LGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGK 258
           LGKI+IEL ++  PKTC+NF  L   ++G+ Y G IFHRVIP+F++QGGD T   G GG 
Sbjct: 10  LGKILIELYTEHAPKTCQNFYTLA--KEGY-YDGVIFHRVIPDFVIQGGDPTG-TGRGGT 65

Query: 259 SIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEG 435
           SIYG+KF+DE +  L HTG G+LSMANAG +TN SQFFIT   T WLDG+H +FG VV G
Sbjct: 66  SIYGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFGRVVSG 125

Query: 436 MEVVKQI 456
           + V K++
Sbjct: 126 LSVCKRM 132


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score =  122 bits (294), Expect = 5e-29
 Identities = 64/127 (50%), Positives = 83/127 (65%), Gaps = 1/127 (0%)
 Frame = +1

Query: 82  GKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKS 261
           G I I+L  +  PK  +NF      E G+ Y  +IFHR+I NFM+QGGD    +GTGG+S
Sbjct: 464 GDISIKLYPEEAPKAVQNFTT--HAENGY-YDNTIFHRIIKNFMIQGGDPLG-DGTGGES 519

Query: 262 IYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGM 438
           I+   FEDE +  LKH  P  +SMAN+G +TNGSQFFITT  T WLDG+H +F     G+
Sbjct: 520 IWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKHTIFARAYAGL 579

Query: 439 EVVKQIE 459
           +VV +IE
Sbjct: 580 DVVHRIE 586


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score =  109 bits (262), Expect = 4e-25
 Identities = 61/138 (44%), Positives = 82/138 (59%), Gaps = 1/138 (0%)
 Frame = +1

Query: 82  GKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKS 261
           G+I IEL +D  P    NF  L   ++G+ Y+ +IFHR I  FM+QGGD  +  G GG+S
Sbjct: 285 GEINIELHTDYAPHAVYNFVQLA--KQGY-YRNTIFHRNIARFMIQGGD-PSGTGRGGQS 340

Query: 262 IYGNKFEDENFT-LKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGM 438
           I+G  F+DE    LKH   G++SMAN G +TNGSQFFI       LD +H +FG VV G+
Sbjct: 341 IWGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHTIFGRVVGGL 400

Query: 439 EVVKQIETFGSQSGKTSK 492
            V+  +E   + S    K
Sbjct: 401 NVLDALEKVPTNSNDHPK 418


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 87.8 bits (208), Expect = 1e-18
 Identities = 52/117 (44%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
 Frame = +1

Query: 82  GKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKS 261
           G I IEL     PK C NF  LC   +G+ Y G+I HRV+P F++QGGD T   G GG+S
Sbjct: 22  GDIQIELWCKEVPKACRNFIQLCL--EGY-YDGTIVHRVVPEFLIQGGDPTG-TGMGGES 77

Query: 262 IYGNKFEDENF-TLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVV 429
           IYG  F  E    L+    G++ MA    + N SQFFIT   T   +G+  +FG VV
Sbjct: 78  IYGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITLGPTPEWNGKQTLFGRVV 134


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 16/162 (9%)
 Frame = +1

Query: 70  DAPLGKIVIELRSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGT 249
           +  +G +VI+L     PKTCENF  LC   K   Y    F+ +  N+  Q GD     G 
Sbjct: 6   ETTVGDLVIDLFVKEAPKTCENFLKLC---KLKYYNFCPFYNIQHNYTCQTGDPLGPTGD 62

Query: 250 GGKSIY-----GNKFEDENF--TLKHTGPGVLSMANAGADTN-------GSQFFIT-TVK 384
           GG+ ++     G +F    F  +L H   G++SM+ A   +        GSQF IT +  
Sbjct: 63  GGRCVWNVLNKGTRFFKAEFNPSLVHNKMGLVSMSTATISSRDDKLLVCGSQFIITLSDN 122

Query: 385 TSWLDGRHVVFGNVVEGMEVVKQI-ETFGSQSGKTSKRIVIK 507
              LD R+ ++G V EG + + +I +    + G+  + I IK
Sbjct: 123 LEGLDERYPIYGQVAEGFDTLLKINDAICDEEGQPYRDIRIK 164


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +2

Query: 173 TRAPFSIVSSPISCCKEGTSPTITALGESPSTAISLKTRISPLSTLDLASS 325
           +RA  S++S  I   KE  +P+ITA   SP +A S  + ISP +   + +S
Sbjct: 321 SRAAASLLS--ILDSKEKNTPSITAKAGSPQSAPSKASYISPYARPGITTS 369


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 25/86 (29%), Positives = 39/86 (45%)
 Frame = +2

Query: 50  SSTSLLTMPHWEKLLLS*EVTSLPRRVKTSVPCALARKASVTRAPFSIVSSPISCCKEGT 229
           +STS  ++P       S +  S P    TS  C  +   S+     S +S+PI+     T
Sbjct: 198 TSTSSTSIPIPPTSTSSTDTNSSPLPT-TSTSCTTS--TSIPTGGSSSLSTPITPTVPPT 254

Query: 230 SPTITALGESPSTAISLKTRISPLST 307
           S + T++   P++  S  T  SPL T
Sbjct: 255 STSSTSIPIPPTSTSSTDTNSSPLPT 280



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 25/86 (29%), Positives = 38/86 (44%)
 Frame = +2

Query: 50  SSTSLLTMPHWEKLLLS*EVTSLPRRVKTSVPCALARKASVTRAPFSIVSSPISCCKEGT 229
           +STS  ++P       S +  S P    TS  C  +     T    S+ S+PI+     T
Sbjct: 141 TSTSSTSIPIPPTSTSSTDTNSNPLPT-TSTSCTTSTSIPPTGGSSSL-STPITPTVPPT 198

Query: 230 SPTITALGESPSTAISLKTRISPLST 307
           S + T++   P++  S  T  SPL T
Sbjct: 199 STSSTSIPIPPTSTSSTDTNSSPLPT 224


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 58  VTVDDAPLGKIVIELRSDVTPKTCENFRALCT 153
           V  D+ P+GKI+I  R D+      N    C+
Sbjct: 19  VATDNIPIGKIIIRKRVDILSLDSANLTRTCS 50


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 482 FPDWLPKVSICLTTSMPSTTFPKTTCLPS 396
           FP WL K S CL   +P T+ P T  + S
Sbjct: 302 FP-WLKKNSFCLYLPIPLTSIPSTPSIRS 329


>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 354 WFPVLHHHC 380
           WFP +HHHC
Sbjct: 97  WFPEVHHHC 105


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = -1

Query: 516 TTVFDNDSLRGLPRLAAKGLNLLDNFHAFNNIPKDNMSAIQPGGLDSGDEELG 358
           T VFD      + +L+   ++++DN     +IPK+   A       S +  +G
Sbjct: 525 TVVFDKTGTLTVGKLSVTDISIVDNLEELLDIPKNIFWAFVKASESSSEHPIG 577


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -2

Query: 449 LTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCL 300
           LT  +P TTF  T  +P + +V    ++++ PL+        + P PV L
Sbjct: 37  LTEQLP-TTFRITASIPHATQVRDYFIEHYYPLIENARTEDAKIPLPVSL 85


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 226 DFTNHNGTGGKSIYGNKFEDEN-FTLKHTGPGVLSMANAGADTNGSQFFI 372
           D   +  T  KS+YG   +D+N F +  T   V+      ADT   Q F+
Sbjct: 11  DLEKYPSTATKSVYGQSKDDKNVFDIHPTESEVIPGEVEYADTPSHQNFL 60


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = -2

Query: 467 PKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCLRVKF 288
           P  S  + +S  +++   T+  P+S EV T       P+ S+ A + E + G     V  
Sbjct: 162 PASSTEVASSYSASSTEVTSSYPASSEVATSTSSYVAPVSSSVASSSEISAGSATSYVPT 221

Query: 287 SSSNL 273
           SSS++
Sbjct: 222 SSSSI 226


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = -1

Query: 234  GEVPSLQHEIGDDTMENGALVTEAFLASAQGTEVFTRLGSDVTSQLNNNFSQWGIVNSDV 55
            GEV ++QH    +T+++    T     S+  TE+  RL + +   ++ N +         
Sbjct: 878  GEVSAIQHSSAQNTLDDHVNTTTHESPSSAFTEILERLKA-IEQNISTNHTNDSAALKSS 936

Query: 54   EEYS 43
            E++S
Sbjct: 937  EDHS 940


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
 Frame = -1

Query: 438 HAFNNIPKDNMSAIQPGGLDSGDEELGTISISTGISHGEDARSSVLKG------EILVFK 277
           H  N  P    +   P   +S   EL      + IS+G+DA S VLK       E++V +
Sbjct: 228 HELNESPSTPTAPDFPH-YNSSPSELSPTQRRSSISNGKDAPSPVLKDLTSYTQEVIVCR 286

Query: 276 LIAVDGLSPS 247
                 LSPS
Sbjct: 287 KFLHHSLSPS 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,289,925
Number of Sequences: 5004
Number of extensions: 73480
Number of successful extensions: 257
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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