Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a21
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    27   1.9  
SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2...    25   7.7  

>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 563 LILSITHRLIIGFFLSILLYSSLC*VFYFMI 655
           L+L++ H  IIGFF+  L + +L  VFY +I
Sbjct: 74  LLLTLFHFPIIGFFVECLGFFNLFKVFYPLI 104


>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 263 ALYDRNKIELCIYYN*VAFRSIICAWSYKYYNTYIAYD 150
           +L   NK  +C Y   VA R ++   + KYYN    +D
Sbjct: 308 SLLGMNKDLMCQYIEFVADRLLVALGNDKYYNVTNPFD 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,949
Number of Sequences: 5004
Number of extensions: 54317
Number of successful extensions: 104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)