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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a12
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    32   0.088
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    31   0.15 
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    29   0.62 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.62 
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    28   1.4  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   1.9  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   3.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.3  
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    25   7.7  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 31.9 bits (69), Expect = 0.088
 Identities = 29/117 (24%), Positives = 54/117 (46%)
 Frame = +1

Query: 97  IPTSLTTFWRSSFTIASSLPITTVRLKRASIYTRRRRAKSSQM**TN*YETTR*TAWSTP 276
           +P + T    S++TI+SS P+T+  +   +  T      +S    +    TT  T  ST 
Sbjct: 502 VPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTT-STS 560

Query: 277 INFGSRAPRTSSVIVSQLSSDLSSPKTPLSLCTSATVSL*R*VMMFTATMADLPSAT 447
           + + S    +S+  +S  +   S+P T  +  TS +V       ++T+T    P++T
Sbjct: 561 VPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSV-------LYTSTPITSPNST 610



 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 595 SESTASIVSEPSGTCSPLNTTKTICSTST 681
           S S+ S  S    + SPL +T T C+TST
Sbjct: 91  STSSTSSASTTGSSSSPLPSTSTSCTTST 119



 Score = 25.4 bits (53), Expect = 7.7
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
 Frame = +1

Query: 577 TATTWP-SESTASIVSEPSGTCS------PLNTTKTICSTST 681
           T T  P S S+ SI   P+ T S      PL TT T C+TST
Sbjct: 135 TPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTST 176



 Score = 25.4 bits (53), Expect = 7.7
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
 Frame = +1

Query: 577 TATTWP-SESTASIVSEPSGTCS------PLNTTKTICSTST 681
           T T  P S S+ SI   P+ T S      PL TT T C+TST
Sbjct: 192 TPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTST 233



 Score = 25.4 bits (53), Expect = 7.7
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
 Frame = +1

Query: 577 TATTWP-SESTASIVSEPSGTCS------PLNTTKTICSTST 681
           T T  P S S+ SI   P+ T S      PL TT T C+TST
Sbjct: 248 TPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTST 289


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
 Frame = +3

Query: 120 LEEQLYNSIVVADYDSAVE--KSKH--LYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 287
           L E   +  V  D +S  E  K KH  + + +KS + ++   K+++ NK+N +E A Q W
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169

Query: 288 LQGSKD 305
            +  K+
Sbjct: 170 SKYIKE 175


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 471 VSWKFIALWENNKVYFKILNTERNQYLVLGVGTNPNG 581
           + +K I L++NN+   KILN  R    V+ VGT  NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 8/200 (4%)
 Frame = +1

Query: 103 TSLTTFWRSSFTIASSLPITTVRLKRASIYTRRRRAKSSQM**TN*YETTR*TAWSTPIN 282
           T LT+   ++ T ASS P+T+V    A+       A S+ +   N   +T  ++ +   N
Sbjct: 357 TPLTSVNSTTATSASSTPLTSVNSTSAT------SASSTPLTSANSTTSTSVSSTAPSYN 410

Query: 283 FGSRAPRTSSVIVSQLSS-----DLSSPKTPLSL--CTSATVSL*R*VMMFTATMADLPS 441
             S  P TSSV  + LSS       S+  TPLS    T+AT +    +    +T A   S
Sbjct: 411 TSSVLP-TSSVSSTPLSSANSTTATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSAS 469

Query: 442 ATVRTKQARKSAGXXXXXXXXXXXXXXXXXXXXXNIWYWESVL-TRTATTWPSESTASIV 618
           +T  T     +A                       +    S   T  ++T PS +T+S++
Sbjct: 470 STPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVL 529

Query: 619 SEPSGTCSPLNTTKTICSTS 678
              S + +PL++  +  +TS
Sbjct: 530 PTSSVSSTPLSSANSTTATS 549



 Score = 26.6 bits (56), Expect = 3.3
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +1

Query: 97  IPTSLTTFWRSSFTIASSLPITTVRLKRA-SIYTRRRRAKSSQM**TN*YETTR*TAWST 273
           +PTS  TF  S F   S LP ++     + S         SS    T+   T+   + ST
Sbjct: 677 VPTS--TFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTS---SVST 731

Query: 274 PINFGSRAPRTSSVIVSQLSSDLSSPKTP 360
           P++  S  P + S   S+LSS L+S   P
Sbjct: 732 PLSNSSAYPSSGSSTFSRLSSTLTSSIIP 760


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 456 KTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGVGTN 572
           K SPKV+WK   +W + K   K +++      +LG G++
Sbjct: 28  KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGSS 65


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 129 QLYNSIVVADYDSAVEKSKHLYEEKKS 209
           QL N     DY+   E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 201 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 293
           K+   +T+  NKL+ ++  +  +YAY L LQ
Sbjct: 35  KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 289 SRAPRTSSVIVSQLSSDLSSP-KTPLSLCTSATVS 390
           S  P T S + S LSS  SSP  T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 554 YQILVTLSVQDLEVDLVVLPQSNELPADF 468
           +Q+ V  ++QDL+  L   PQ N L  +F
Sbjct: 3   FQVRVKQNMQDLDNRLAAFPQLNSLEKNF 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,617
Number of Sequences: 5004
Number of extensions: 51111
Number of successful extensions: 211
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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