Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0100
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    27   3.6  
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo...    26   6.2  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   8.2  

>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 167 FFNCLFLALSEPMFLIKKLMHFFSL 241
           FF  L L +   +F I+KL++FFS+
Sbjct: 588 FFRFLLLTVQSLVFAIEKLVNFFSM 612


>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -1

Query: 418 NGNILRAQDIDNKSMATG 365
           NGNIL AQDID     TG
Sbjct: 211 NGNILHAQDIDRCIKYTG 228


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 119 YELLETTNIQLIWAIVFFNCLFLALSEPM 205
           Y LL T  I L  A+   NCLFL +  P+
Sbjct: 378 YSLLRTCYIALA-AVTVSNCLFLGVVRPL 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,410
Number of Sequences: 5004
Number of extensions: 48086
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)