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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0004
         (537 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    27   1.8  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    27   2.3  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   3.1  
SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...    26   3.1  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    26   4.1  
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce...    26   4.1  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    25   5.4  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   7.2  
SPBC13G1.12 |did2||vacuolar sorting protein Did2|Schizosaccharom...    25   7.2  
SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr...    25   7.2  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   7.2  
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo...    25   7.2  
SPAC694.03 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.5  
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom...    25   9.5  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    25   9.5  

>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 359 SGTTMVRAKNARRSHQHCRRVLKLTSRIY 445
           SG   V +KNAR +H   RR+ K TS +Y
Sbjct: 269 SGKLSVLSKNARLTHWVERRIGKSTSLVY 297


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 531 HLKALIVIAEGRDLVPASFSAHA 463
           +L  ++V +   D  PASFSAHA
Sbjct: 154 YLTGIVVTSRVTDATPASFSAHA 176


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 473 LHMPSLSRFGRFLRSTLKRGGSVDDSAVHSSPSPL*YR 360
           LH PS  R  + L    +    ++D ++H+SP P+ Y+
Sbjct: 619 LHHPSTKRSHKMLEGK-ELSQELEDLSLHNSPDPIIYK 655


>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/53 (24%), Positives = 29/53 (54%)
 Frame = +1

Query: 343 EQLLCFRYYNGEGEECTAESSTLPPRFKVDLKNLPNRLKEGMCRKRSGDQVSA 501
           ++++ F   + + +E   + S     +K  ++N+P+RL+  + RKRS +   A
Sbjct: 39  KEIVAFAQKHMQTKEVRVDPSLNKEVWKRGIRNVPHRLRLRLSRKRSDEDDKA 91


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/28 (42%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
 Frame = -2

Query: 473 LHMPSLSRFGRFLRSTL--KRGGSVDDS 396
           L++P+LSRFG+ + ++L  + G S DD+
Sbjct: 5   LNIPALSRFGKSISASLHHQNGSSRDDN 32


>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 128 FPWIHLQGRLGEIWPSNQRKSLSVKAAH 211
           FPW  L      +WPS   + L +K AH
Sbjct: 310 FPWTRLDPYYNGVWPSIDERPL-LKTAH 336


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 233 YTSEVSTNVLLSQRGISSDLMAKFHLNVPVNV 138
           Y SEV+ N+L++   +    + +  LN P N+
Sbjct: 234 YCSEVTGNLLINVMHVDEQYVKRLKLNQPYNI 265


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 23  GFSFIFDVFKFDIVLKSVLFSRLLKTN 103
           G+S  +  + FD VL S++FS+L   N
Sbjct: 678 GYSATYYSYIFDTVLASLIFSKLFAGN 704


>SPBC13G1.12 |did2||vacuolar sorting protein
           Did2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 178

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 374 VRAKNARRSHQHCRRVLKLTSRIYRIDSK 460
           + A NA R  Q    +LKL+SRI  + S+
Sbjct: 28  IYASNAIRKQQESLNLLKLSSRIDAVSSR 56


>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 179

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +1

Query: 409 LPPRFKVDLK-NLPNRLKEGMCRKRSGD--QVSAFCYNNE 519
           LPPRF VD+K        E    K+  D  +V+A C N +
Sbjct: 127 LPPRFHVDVKVKKGTHASESQVNKQLNDKERVAAACENEQ 166


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = -2

Query: 266 RPTTLTGSDVSYTSEVSTN--VLLSQR--GISSDL 174
           RP+TL  SD+ YT  +  N  VL ++R   + SDL
Sbjct: 697 RPSTLFSSDIEYTPTIQLNRQVLKTRRTYNLFSDL 731


>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 22/69 (31%), Positives = 29/69 (42%)
 Frame = +1

Query: 226 DVYETSEPVSVVGRVPASGCASGDIMWLLNEPNQPYEDCEQLLCFRYYNGEGEECTAESS 405
           D  +TS    VV  VPA G     I++    P   Y  CE       Y+    EC  + S
Sbjct: 154 DAEDTSSDPVVVVNVPA-GYGPRHIVFHKTLP-VCYLICELANRILVYDTNTFECLQDVS 211

Query: 406 TLPPRFKVD 432
           TLPP   ++
Sbjct: 212 TLPPSMTLE 220


>SPAC694.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 249

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 325 QPYEDCEQLLCFRYYNGEGEECTAESSTLPPRFKVDLKNLPNRLKE 462
           QP+  C Q+LCF     +G     ++  L    K  L N+P++  E
Sbjct: 152 QPFFSCSQILCFS-REVDGTTTDDQAQYLEKIKKSLLPNIPSQWSE 196


>SPBC119.04 |mei3||meiosis inducing protein Mei3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 440 FLRSTLKRGGSVDDSAVHSSP 378
           F+ ST KRG S    +VHS P
Sbjct: 55  FISSTSKRGRSTKAGSVHSVP 75


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 290 LAHPLAGTRPTTLTGSDVSYTSEVST 213
           +  PLAGT  TT+    V Y + ++T
Sbjct: 141 VVEPLAGTVTTTIHSGSVEYNTTLAT 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,054,163
Number of Sequences: 5004
Number of extensions: 39731
Number of successful extensions: 140
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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