Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120075.Seq
(786 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 29 0.76
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 29 1.00
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|... 28 1.3
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 28 1.7
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 4.0
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 27 4.0
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 5.3
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 26 7.0
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 7.0
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 7.0
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 26 7.0
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 26 7.0
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 26 7.0
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy... 25 9.3
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 25 9.3
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 29.1 bits (62), Expect = 0.76
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -2
Query: 404 IAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVE 285
IAK G+SKRK+ + YE++K P DL + S T+ E
Sbjct: 116 IAKFLGSSKRKSKELIEAYEASKTPP---DLKEESSTDEE 152
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 28.7 bits (61), Expect = 1.00
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 68 EFEFILSKSSMVNLNLLNSKLDVFVLIVDRNLL 166
E + +L +N +LNS+ DV + ++D+NLL
Sbjct: 40 EAKLLLPNGMSLNETVLNSESDVVIYVLDQNLL 72
>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -3
Query: 691 IFRNKADTRQIAAVVFSTLAFIHNRFHPLV---TNFTNKMEFVVTETNDTS 548
IFR + R V AFI N++ PLV T++TN V +TN S
Sbjct: 93 IFRFNLNHRGYLEVKSGFRAFIENKYSPLVFHATSWTNGFSIDVQKTNPIS 143
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -2
Query: 443 ALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSI 297
+L NF++DNC ++ + S R N S+ S D+DL +++
Sbjct: 223 SLANFQSDNCKLKSHNSL-PSIRTNVRYSNSKPSTPLSPEDVDLGTYTV 270
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = -3
Query: 595 FTNKMEFVVTETNDTSIPGEPILFTENEGCCCAPSTDRLSLKC*AASLTPRL 440
F K+E + ++ S P E L C S R+ KC SL PR+
Sbjct: 1214 FIPKLEMLKFNAHEFSSPSEKTLVNHCNSCNSTTSNTRICEKC--YSLVPRM 1263
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 542 GNACVISFSDHKLHFVSKISNK 607
G+AC +S + K+H ++ ISN+
Sbjct: 230 GSACAVSDDEGKIHVINDISNE 251
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 243 YLHYYIFKNYGVFEYCKSLTDHSLFTN 163
+L Y+ K YG+ YC L ++SL N
Sbjct: 2483 HLLVYLSKTYGLHHYCILLLENSLQNN 2509
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 7.0
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = -2
Query: 461 REFDTEALVNFENDNCNVRIAK------TFGASKRKNTTRSDDYESNKQPDYDMDLSDFS 300
R+ TE + N V++AK +F K+KNTT S ES+ D D S
Sbjct: 6 RKESTEVKKKDGSMNKRVKVAKLPKKVDSFSPKKKKNTTSSGSSESDSMSQNDKK-KDSS 64
Query: 299 ITEVE 285
+ E E
Sbjct: 65 LNESE 69
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 539 SGNACVISFSDHKLHFVSKISNKW 610
SGN +S D+K++ + NKW
Sbjct: 266 SGNILAVSCGDNKVYLFKESQNKW 289
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 397 LAIRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNSTP 513
L I+ QLSFS+ S + SRL +T+ + TP
Sbjct: 889 LIIKEEQLSFSRLQLLSRATSRLRTMTLSVFNNSGTLTP 927
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 578 LHFVSKISN-KWMESIVYKS*CAKHHGGNLPSVCFVSKYFQQRLGHFQGAEHSHVF 742
L +++ +S+ KW+E + K C K+ N S K F + +G+ A + +
Sbjct: 157 LQYITGVSDTKWLEFVSAKGQCPKYLYWNNKSYLLKKKRFLKEVGNSPSAVYCRYY 212
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 777 SYETLKLNWRSANTWLCSAPWK*PSRCWK 691
S + L + RS T S WK PS+ WK
Sbjct: 144 SNDYLTITGRSGRTLKLSKEWKNPSKKWK 172
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = +3
Query: 561 VSVTTNSILLVKLVTSGWNLLCIKANVLNTTAAICRVSALFLN 689
+S+ TNS L VKL ++ + C+ + + ++ ++ ++ L L+
Sbjct: 905 ISMQTNSSLSVKLNSNSNTITCVVSGTMVSSPSLANITILGLS 947
>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 410
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 579 SILLVKLVTSGWNLLCIKANV 641
S +L L+ GW ++C ANV
Sbjct: 19 SCILAWLIEEGWEVICYMANV 39
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/63 (25%), Positives = 26/63 (41%)
Frame = -3
Query: 700 LLEIFRNKADTRQIAAVVFSTLAFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFT 521
+LEI D + ++VFST R++ LV ++ + E D IL
Sbjct: 292 ILEILTVHCDLEESFSIVFSTQPRFIARYNELVQAVSSSSNSEIDEVEDAETIDSKILEK 351
Query: 520 ENE 512
N+
Sbjct: 352 RND 354
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,956
Number of Sequences: 5004
Number of extensions: 57173
Number of successful extensions: 203
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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