Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120071.Seq
(801 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 116 5e-27
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 87 2e-18
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 67 2e-12
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 58 1e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 54 2e-08
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 54 2e-08
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 52 7e-08
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 52 1e-07
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 51 2e-07
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 51 2e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 46 5e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 46 5e-06
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 46 6e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 46 6e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 45 1e-05
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 45 1e-05
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 44 2e-05
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 41 2e-04
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 41 2e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 40 3e-04
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 37 0.004
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.027
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 33 0.047
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 32 0.11
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 32 0.11
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 27 3.1
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 27 4.1
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 27 4.1
SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 25 9.5
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 9.5
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 9.5
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 116 bits (278), Expect = 5e-27
Identities = 55/80 (68%), Positives = 62/80 (77%)
Frame = +3
Query: 525 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 704
TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQQ FG +S +RNT
Sbjct: 168 TGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNT 227
Query: 705 CVFGGAPKREQARDLEKGVE 764
CV+GG P+ Q RDL +GVE
Sbjct: 228 CVYGGVPRGPQIRDLIRGVE 247
Score = 97.5 bits (232), Expect = 2e-21
Identities = 43/84 (51%), Positives = 56/84 (66%)
Frame = +2
Query: 257 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 436
+L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 437 KTMGYKEPTPIQAQGWPIAMSGKN 508
K +G++ PTPIQ Q WP+AMSG++
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRD 161
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 87.4 bits (207), Expect = 2e-18
Identities = 38/81 (46%), Positives = 56/81 (69%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 701
+TGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI + F +R
Sbjct: 463 KTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRA 522
Query: 702 TCVFGGAPKREQARDLEKGVE 764
C +GGAP ++Q DL++G E
Sbjct: 523 CCAYGGAPIKDQIADLKRGAE 543
Score = 49.6 bits (113), Expect = 5e-07
Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 5/183 (2%)
Frame = +2
Query: 263 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVK 439
+ F K+FY + SP EV+E R + + + + G++ P+ + + +
Sbjct: 375 EDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVIN 434
Query: 440 TMGYKEPTPIQAQGWPIAMSGKN*LAYS-NGFRQNVG--LHLASHCAHKQPTAYSER*WS 610
++GY++PT IQAQ P SG++ + + G + + L + H ++P E
Sbjct: 435 SLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGE---G 491
Query: 611 DCFGLGAYQRVSTTNSASCCRFWTHILCS*HVCVW-WCS*KRASPGLGEGSRIVIATPGR 787
+ R C+ + +L C + K L G+ IV+ TPGR
Sbjct: 492 PIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGR 551
Query: 788 LID 796
+ID
Sbjct: 552 MID 554
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 67.3 bits (157), Expect = 2e-12
Identities = 37/82 (45%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHTSY 692
+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ F
Sbjct: 294 ETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLG 353
Query: 693 VRNTCVFGGAPKREQARDLEKG 758
R V GG EQ+ + +G
Sbjct: 354 FRCVSVVGGHAFEEQSFQMSQG 375
Score = 42.7 bits (96), Expect = 6e-05
Identities = 16/57 (28%), Positives = 35/57 (61%)
Frame = +2
Query: 338 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKD 288
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 746 LGEGSRIVIATPGRLID 796
+ +G+ IV+ATPGRL+D
Sbjct: 372 MSQGAHIVVATPGRLLD 388
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 58.0 bits (134), Expect = 1e-09
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTRELAQQIQQVAADFGH---T 686
QTGSGKTLAY+LP + + P R G A+++APTREL QQI VA + +
Sbjct: 186 QTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLS 245
Query: 687 SYVRNTCVFGGAPKREQARDLEKGV 761
++ + V GG K+ + + KGV
Sbjct: 246 HWIVSCNVIGGEKKKSEKARIRKGV 270
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 54.4 bits (125), Expect = 2e-08
Identities = 30/74 (40%), Positives = 45/74 (60%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 701
+TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q + + ++
Sbjct: 210 ETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQTYENLNSLIQGTNLKA 267
Query: 702 TCVFGGAPKREQAR 743
V+GGAPK EQAR
Sbjct: 268 VVVYGGAPKSEQAR 281
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/42 (42%), Positives = 28/42 (66%)
Frame = +2
Query: 383 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
PI F+E + +++G+K YKEPTPIQA WP ++G++
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRD 204
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 54.0 bits (124), Expect = 2e-08
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 13/94 (13%)
Frame = +3
Query: 522 QTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQQ 662
QTGSGKT ++ P + + + P P+ + G P L+LAPTREL QI +
Sbjct: 214 QTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHE 273
Query: 663 VAADFGHTSYVRNTCVFGGAPKREQARDLEKGVE 764
+ F + S+VR V+GGA R Q R +++G +
Sbjct: 274 ESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCD 307
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +2
Query: 353 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 517
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++ +A
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMA 211
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 52.4 bits (120), Expect = 7e-08
Identities = 35/79 (44%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 698
QTGSGKT A+ LP I + NN P A+VLAPTRELA QI + G + VR
Sbjct: 91 QTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVR 144
Query: 699 NTCVFGGAPKREQARDLEK 755
+ + GG QA L K
Sbjct: 145 SVVIVGGMDMVTQAVALSK 163
Score = 30.3 bits (65), Expect = 0.33
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
F+E D + + + +G+K PTPIQ + P+ ++ ++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRD 85
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 52.0 bits (119), Expect = 1e-07
Identities = 27/72 (37%), Positives = 40/72 (55%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 701
+TGSGKT A+++P I H+ + AL+L+P RELA Q +V DF + +R+
Sbjct: 114 RTGSGKTAAFVIPMIEHLKST---LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRS 170
Query: 702 TCVFGGAPKREQ 737
+ GG EQ
Sbjct: 171 VAIVGGVSLEEQ 182
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
F+ + + + G+K PTPIQ + P+ + G++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRD 108
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 51.2 bits (117), Expect = 2e-07
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Frame = +3
Query: 522 QTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 695
+TGSGKTLA+++P I ++ P R G G I +++PTRELA QI VA + +
Sbjct: 134 KTGSGKTLAFLIPTIEMLYALKFKP-RNGTGVI--IISPTRELALQIFGVAKELLKYHHQ 190
Query: 696 RNTCVFGGAPKREQARDLEKGV 761
V GGA +R +A L KGV
Sbjct: 191 TFGIVIGGANRRAEADKLVKGV 212
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 51.2 bits (117), Expect = 2e-07
Identities = 31/78 (39%), Positives = 41/78 (52%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 701
+TGSGKT A+ LP I + P G AL+L PTRELA QI + A G +++
Sbjct: 52 KTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFAALGANLNLKH 106
Query: 702 TCVFGGAPKREQARDLEK 755
+ GG Q+ DL K
Sbjct: 107 ALIVGGMDMIRQSIDLSK 124
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 46.4 bits (105), Expect = 5e-06
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 665
+ +TGSGKT AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 57 QARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
Score = 30.7 bits (66), Expect = 0.25
Identities = 12/51 (23%), Positives = 29/51 (56%)
Frame = +2
Query: 365 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 517
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+ +A
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVA 56
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 46.4 bits (105), Expect = 5e-06
Identities = 25/81 (30%), Positives = 43/81 (53%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 695
+ +TG+GKTLA++L A + P +++L+PTRELA QI + A + + +
Sbjct: 82 QAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGI 141
Query: 696 RNTCVFGGAPKREQARDLEKG 758
R + GG K + + +G
Sbjct: 142 RVSYAIGGNSKMREENAIRRG 162
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 46.0 bits (104), Expect = 6e-06
Identities = 29/82 (35%), Positives = 43/82 (52%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 695
+ Q+G+GKT + + + I+ +++ AL+LAPTRELAQQIQ+V G V
Sbjct: 62 QAQSGTGKTATFSISVLQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNV 116
Query: 696 RNTCVFGGAPKREQARDLEKGV 761
GG R+ L+ GV
Sbjct: 117 ECHACIGGTLVRDDMAALQAGV 138
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 46.0 bits (104), Expect = 6e-06
Identities = 25/50 (50%), Positives = 31/50 (62%)
Frame = +3
Query: 525 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 674
TGSGKTLAY+LP + + G G AL++APTRELA QI V +
Sbjct: 47 TGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
Score = 31.1 bits (67), Expect = 0.19
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
F+ N +++ V G+K+ TP+QA P+ + K+
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKD 40
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 45.2 bits (102), Expect = 1e-05
Identities = 28/78 (35%), Positives = 41/78 (52%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 701
+TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 84 KTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIGRLHSFSA 142
Query: 702 TCVFGGAPKREQARDLEK 755
+ GG +E+ L +
Sbjct: 143 GLIIGGNNYKEEKERLSR 160
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 44.8 bits (101), Expect = 1e-05
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQQIQQVAADFGHTS 689
+ TGSGKTLA+ +P + H +R D ALV+APTRELA QI Q +
Sbjct: 165 KADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQHFELIKPSP 219
Query: 690 YVRNTCVFGGAPKREQARDLEK 755
+R + GG ++Q R L K
Sbjct: 220 NIRVMSITGGLAVQKQQRLLNK 241
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 44.4 bits (100), Expect = 2e-05
Identities = 26/77 (33%), Positives = 39/77 (50%)
Frame = +3
Query: 525 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 704
TGSGKT A+I+P + + +P ++ L+L PTRELA Q VA + +
Sbjct: 305 TGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVC 362
Query: 705 CVFGGAPKREQARDLEK 755
GG + Q ++L K
Sbjct: 363 LCIGGLSLKLQEQELRK 379
Score = 30.3 bits (65), Expect = 0.33
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
F+ N + +G+ +G++ PT IQ + P+A+ GK+
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKD 298
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 695
R + G+GKT A+++P++ ++ + + L+L PTRELA Q QV G V
Sbjct: 87 RAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTRELALQTSQVCKTLGKHMNV 141
Query: 696 RNTCVFGGAPKRE 734
+ GG R+
Sbjct: 142 KVMVTTGGTTLRD 154
Score = 35.1 bits (77), Expect = 0.012
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAYS-NGFRQNVGLHLASHCA 571
FE+ + G+ G++ P+PIQ + PIA+SG++ LA + NG + + S
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPS--L 103
Query: 572 HKQPTAYSER*WSDCFGLGAYQRVSTTNSASCCRFWTHILCS*HVCVWWCS*KRASPGLG 751
K T S+ L + ++ S C H+ V + + L
Sbjct: 104 EKVDTKKSK---IQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLN 160
Query: 752 EGSRIVIATPGRLID 796
+ IV+ TPGR++D
Sbjct: 161 DTVHIVVGTPGRVLD 175
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 40.7 bits (91), Expect = 2e-04
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 695
++Q+G+GKT A+ L + ++ P P A+ LAP+RELA+QI V + G + V
Sbjct: 159 QSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEV 213
Query: 696 R 698
+
Sbjct: 214 K 214
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +3
Query: 525 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 668
TGSGKT+AY+ P + + P G A+++APTREL +QI + A
Sbjct: 92 TGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYRQA 135
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 36.7 bits (81), Expect = 0.004
Identities = 26/81 (32%), Positives = 39/81 (48%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 695
+ Q+G+GKT + + + I+ +R AL+L+PTRELA QIQ V G V
Sbjct: 64 QAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDHMNV 118
Query: 696 RNTCVFGGAPKREQARDLEKG 758
+ GG + L+ G
Sbjct: 119 QCHACIGGTSVGNDIKKLDYG 139
Score = 34.3 bits (75), Expect = 0.020
Identities = 35/156 (22%), Positives = 60/156 (38%)
Frame = +2
Query: 329 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 509 *LAYSNGFRQNVGLHLASHCAHKQPTAYSER*WSDCFGLGAYQRVSTTNSASCCRFWTHI 688
+A + + G Q S R + L + ++ H+
Sbjct: 61 VIAQA---QSGTGKTATFSIGILQSIDLSVR-DTQALILSPTRELAVQIQNVVLALGDHM 116
Query: 689 LCS*HVCVWWCS*KRASPGLGEGSRIVIATPGRLID 796
H C+ S L G +V TPGR+ D
Sbjct: 117 NVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTD 152
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 33.9 bits (74), Expect = 0.027
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +3
Query: 525 TGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 656
TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 182 TGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 33.1 bits (72), Expect = 0.047
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA-LVLAPTRELAQQIQQVAADFG-HTS 689
+ ++G GKT ++L + I P+ DG ++ LVL TRELA QI+ A F +
Sbjct: 94 QAKSGMGKTAVFVLSTLQQIE---PV---DGEVSVLVLCHTRELAFQIKNEYARFSKYLP 147
Query: 690 YVRNTCVFGG 719
VR +GG
Sbjct: 148 DVRTAVFYGG 157
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.9 bits (69), Expect = 0.11
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 525 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 656
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.9 bits (69), Expect = 0.11
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 525 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 656
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 609 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 752
PI ++ +P E+ ++V D Y+ TC+ P+ E + DLE
Sbjct: 93 PIDIIFSPGEEVF--FERVGGDI--PVYLSGTCIITNIPEEEDSSDLE 136
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Frame = +2
Query: 518 YSNGFRQNVGLHLASHC-------AHKQPTAYSER*WSDCFGLGAYQRVSTTNSASCCRF 676
Y GF + G + HC H++ AY E F Y R++T + C R
Sbjct: 30 YLLGFSCSTGEKIFEHCYRDNINEKHREAAAYGEAIRQVAFSKD-YSRMATVSEDKCLRL 88
Query: 677 W 679
W
Sbjct: 89 W 89
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Frame = +2
Query: 224 SEHASPRLGFFSLQPFNKNFYDPHPTVLKRSPYEVEEY------RNNHEVTVSGVEVHNP 385
++ A R+G +Q F + F+D P + + + NH+ V+ V+ P
Sbjct: 255 TKSAVMRIGLLEMQKFGRMFFDCKPLTMSEESCGIADLITTCLGGRNHKCAVAFVKTGKP 314
Query: 386 IQYFEEANFPDYVQQGVKT 442
+ E+ QG T
Sbjct: 315 MHVVEQELLDGQKLQGAAT 333
>SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1
Query: 540 FCRNPFEYAN*FFPDIAIGQP 478
FC NP N FP IAI P
Sbjct: 50 FCINPKSIRNFLFPPIAISDP 70
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -2
Query: 575 YVHNGWQDVGQRFAGTRLSTPTNSFQTXXXXXXXXXXXSVLCNPLSLHL 429
YV N ++ G T +STP NS +T +L L LHL
Sbjct: 590 YVTNCREEQGAFCVSTYISTPDNSLRTLIVLALMALSSIILPLILQLHL 638
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 525 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 650
TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 543 TGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -2
Query: 446 PLSLHLVAHNQENL--LLQSIE 387
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,214,883
Number of Sequences: 5004
Number of extensions: 67643
Number of successful extensions: 252
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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