Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120070X.Seq
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.3  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    26   3.1  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   5.4  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    25   9.4  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -2

Query: 341  ILHELGIYLIWVKLKPVTEIAD---GGFH*GSVMASRWMVLARVSTKLVKAMLSAEARDK 171
            I H L + ++W  +   T + D     F+  + M   WM      TKL+++ L  ++ +K
Sbjct: 2343 IRHFLKLVVLWKNIYVWTNVPDCDISRFYCYTKMLGEWMFTLTEKTKLLESFLPKDSLEK 2402

Query: 170  LTLL 159
             + L
Sbjct: 2403 FSEL 2406


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
 Frame = +1

Query: 274 PSAISVTGFNFTHIR*IPSSCKILIP-------YSSSMAFTSLVDTLANTIHRDAITAPL 432
           PS +S +  NF     IP S   L+P       Y+ +     L      T+ RD   APL
Sbjct: 349 PSGLSASNSNFASSSFIPQSVPQLLPIYYQTIFYNGNYYLQQLPSASPPTMFRDHSFAPL 408

Query: 433 VETAI 447
           V  +I
Sbjct: 409 VSPSI 413


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 215 TKLVKAMLSAEARDKLTLLVVY 150
           TKL K+MLS+E R K  L  +Y
Sbjct: 164 TKLTKSMLSSEKRSKNHLSKIY 185


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 280 AISVTGFNFTHIR*IPSSCKILIPYSSS 363
           A +VTGF F   R IP +  I++P  S+
Sbjct: 611 ADAVTGFEFRKHRAIPVTTGIIVPEESA 638


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,098,457
Number of Sequences: 5004
Number of extensions: 39072
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)