Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120069.Seq
(764 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo... 30 0.42
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 29 0.73
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 27 2.2
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 3.9
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 26 5.1
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 26 5.1
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 26 6.8
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 6.8
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 25 9.0
>SPAC12B10.09 |||S-adenosylmethionine transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 345
Score = 29.9 bits (64), Expect = 0.42
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -2
Query: 553 LRCRLKTTMSIGRPFFTHLFSVIKNEHKICQFGRVFHQIPHGR 425
++CR+K M + +FS + +K+CQFGR+ I HG+
Sbjct: 20 VQCRIKEIMYWNICLYWDVFSKLIIYNKVCQFGRI--HIFHGK 60
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 29.1 bits (62), Expect = 0.73
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = +2
Query: 221 LQQIQHGPANCFVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNS---WY 391
L+++Q + + ++KN+ + + + K + +K V+ N IL NS W
Sbjct: 891 LRRLQDSAGRTSILYEKQKNLQASITEV---SKQLKSNSKKVTVLRNKLNILNNSLSKWK 947
Query: 392 TKIKQPEWPSSPAMWDLVKNTPELADFV 475
IK+P S P D N +L +
Sbjct: 948 CLIKKPSDFSEPVSMDFTSNDEQLVQLL 975
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +2
Query: 380 NSWYTKIKQPEWPSSPAMW-----DLVKNTPELADFVFIFDHTEKMGKKW 514
+SW +KI P+W + A++ + P LA + + +H+ K KW
Sbjct: 157 DSWPSKITLPKWVHADALFHSRCLESPFKDPVLAPVIDLCNHSSKSNAKW 206
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = +2
Query: 305 PVMQDERKMSKRKKKVINNNKYILFNSWYTK 397
P++ + +K+S + K++ +N Y N W+ +
Sbjct: 1060 PILPNLQKLSTQYSKIVRDNDYGNVNCWFNR 1090
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 215 ELLQQIQH-GPANCFVNFLEKKNINYILNVMPVMQDERKMSKRKKKVI 355
+LL + H P++ F+ LEKKN L + E+K K+I
Sbjct: 216 DLLPETNHYSPSHAFIRLLEKKNKLSTLFTQNIDNLEKKTGLSDNKII 263
>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 5.1
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +3
Query: 354 LTTINTFCLTVGTLRSSSPSGLVARPCGIW*KTRPNW-QILCSFLITLKRWVKNGRPIDI 530
L T+N TVG + S GL+A+ C T P W Q L W G + I
Sbjct: 219 LATLNILAQTVGFMAGSFLGGLLAKAC--MHLTNPIWNQYTVGSWFMLFAWCIYGILLSI 276
Query: 531 VVFKRQRSNSSE 566
FK R++ ++
Sbjct: 277 -FFKEIRADGND 287
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 78 NISSRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQ 245
++SS+ + F ++ + EQ S + K ++LN L YN N DQ
Sbjct: 579 SLSSKHEVDLFTAENEAAREKLVEQLCSLQAQRKQKINEILNLLSMGMYNTINTDQ 634
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -2
Query: 316 LHDRHYVEDIVNVLFF 269
L+DR YVE I+++LFF
Sbjct: 253 LYDRVYVEKILDILFF 268
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 332 SKRKKKVINNNKYILFN-SWYTKIKQPEWP-SSPAMWDLVKNTPEL 463
S R++ V NNN +FN S++ KI + + +WD ++N +L
Sbjct: 232 SLRERFVDNNNSDYIFNVSYHKKIPADGFSLYTREIWDTIENNKDL 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,213,800
Number of Sequences: 5004
Number of extensions: 70062
Number of successful extensions: 224
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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