Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120065.Seq
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    31   0.18 
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    28   1.7  
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    27   2.9  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    26   5.0  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    26   5.0  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   8.8  

>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +3

Query: 288 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELD 398
           ++  +L+C  C ++ EI N  M+P+++L ++ +L L+
Sbjct: 240 LQIEELRCAACETMTEIVNKKMKPLEKLNLLNILNLN 276


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
            Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = +2

Query: 575  DNFDAASL----ASVLFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLN 742
            D F+ AS     ASV  E+S ++ A   NNAA S + + S  +++  + + ++AE  Q  
Sbjct: 833  DEFNGASETVDGASVEAERSAMEAAA-LNNAAESTEVVGSSPESVASEQEENVAESAQAR 891

Query: 743  IK 748
            ++
Sbjct: 892  VE 893


>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 21/88 (23%), Positives = 37/88 (42%)
 Frame = +2

Query: 488 AFQRLQHNRNVVDVIKCSVTSVAQWNKINDNFDAASLASVLFEKSLLDDAEDSNNAANSD 667
           A +  +  + VVDV+K    S A   +  D           FE    D  + S  + N  
Sbjct: 33  AIRSSRSTKPVVDVLKVKSESSADELEERDAHLDRFRRDSTFESETSDHEDFSGGSENEL 92

Query: 668 DTMLSESQAILKKLQIDIAEQTQLNIKR 751
           D   +++   +KK+ ++  E+ +  IKR
Sbjct: 93  DEETTKNANSIKKISLEEVEKQRKAIKR 120


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 291 EFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELD 398
           E +KL+ ++ +SV    +YF++P  R  ++P++  D
Sbjct: 613 ELLKLKQDVDYSVTPNGDYFVKPHVRKGLLPIILAD 648


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 288 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSM 425
           +E++K +  +   +AE    F+Q +  +T I    L  C  +L S+
Sbjct: 336 VEYLKTRMKVLHVIAETPTSFLQHVKDITFIDKKPLRFCAERLTSL 381


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/33 (30%), Positives = 12/33 (36%)
 Frame = +3

Query: 390 ELDTCKHQLCSMCXXXXXXXXXXPCPLCRVESL 488
           +L  CKH     C           CPLCR   +
Sbjct: 781 KLQACKHFFHQACIDQWLTTGNNSCPLCRAHGV 813


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,096
Number of Sequences: 5004
Number of extensions: 51574
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)