BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120063.Seq (784 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 31 0.25 SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 27 4.0 SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 26 5.3 SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 25 9.3 >SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharomyces pombe|chr 2|||Manual Length = 428 Score = 30.7 bits (66), Expect = 0.25 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = +1 Query: 412 CKKCHFVDVHHTFKAA---LTSYFNLDMYYAQ-TTFGLCYNRWAKESVGFFW 555 C +CH D +HTF+ A + Y ++ +Y + T C N K+ +W Sbjct: 350 CDECHDADQNHTFEHANRIICGYCAMESFYKKDATCPHCGNMTVKKQTSAYW 401 >SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase Ade3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1323 Score = 26.6 bits (56), Expect = 4.0 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = -2 Query: 360 YAGFFNQIVRNHKSNFIKRYH 298 + F N I + HK+N+I+ YH Sbjct: 882 FKNFINVITQLHKTNYIQAYH 902 >SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schizosaccharomyces pombe|chr 1|||Manual Length = 191 Score = 26.2 bits (55), Expect = 5.3 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = -3 Query: 734 IFVWGIVGKLYTFRIL*YLTHIRRYKKIIRCSLNFITLFTTKH 606 +F G+ ++ R+L + HIR K+I+ + L T KH Sbjct: 113 VFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKH 155 >SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces pombe|chr 2|||Manual Length = 780 Score = 25.4 bits (53), Expect = 9.3 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +3 Query: 603 IMLSRKESNEIETASNNFFVSPYVSQIL 686 ++ S ES +E +S N V+PYVS++L Sbjct: 749 MLFSAIESRVLEVSSLNPAVAPYVSEML 776 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,269,365 Number of Sequences: 5004 Number of extensions: 68536 Number of successful extensions: 184 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 177 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 184 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 379359666 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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