Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120053.Seq
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 79 9e-16
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 75 9e-15
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 71 1e-13
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 65 9e-12
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 62 6e-11
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 59 6e-10
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 41 2e-04
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb... 29 0.56
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 27 2.2
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 26 6.9
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 26 6.9
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 26 6.9
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 25 9.1
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 78.6 bits (185), Expect = 9e-16
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 7/93 (7%)
Frame = +1
Query: 1 FQNNCEYKNGYSETDQQIRWFWETFHELPLEDKKKFLLFLTGSDRVPIQGMRDI------ 162
++ + +Y++ YSE DQ I+WFWE E E K + L F TG+ R+P+ G +D+
Sbjct: 657 WKKHTDYRS-YSENDQIIKWFWELMDEWSNEKKSRLLQFTTGTSRIPVNGFKDLQGSDGP 715
Query: 163 -KIRIQPVADDRFFPVAHTCFNLLDLPRYKTKR 258
K I+ + P AHTCFN LDLP Y +K+
Sbjct: 716 RKFTIEKAGEPNKLPKAHTCFNRLDLPPYTSKK 748
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 75.4 bits (177), Expect = 9e-15
Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Frame = +1
Query: 1 FQNNCEYKNGYSETDQQIRWFWETFHELPLEDKKKFLLFLTGSDRVPIQGMRDI------ 162
++++ EY+ Y TD I+WFWE ED+ K L F TG+ R+P+ G RD+
Sbjct: 676 WKSHTEYRT-YIATDPVIKWFWEIIAGWKNEDRSKLLQFATGTSRIPVNGFRDLQGSDGP 734
Query: 163 -KIRIQPVADDRFFPVAHTCFNLLDLPRYKTK 255
K I+ PVAHTCFN LDLP Y +K
Sbjct: 735 RKFTIEKAGTPDQLPVAHTCFNRLDLPDYPSK 766
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 71.3 bits (167), Expect = 1e-13
Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Frame = +1
Query: 16 EYKNGYSETDQQIRWFWETFHELPLEDKKKFLLFLTGSDRVPIQGMRDI-------KIRI 174
+Y++ Y+ETD + WFWE E E K K L F TG+ R+P+ G +D+ K I
Sbjct: 566 DYRS-YTETDDIVIWFWELLSEWSPEKKAKLLQFATGTSRLPLSGFKDMHGSDGPRKFTI 624
Query: 175 QPVADDRFFPVAHTCFNLLDLPRYKTK 255
+ V P AHTCFN LD+P Y +K
Sbjct: 625 EKVGHISQLPKAHTCFNRLDIPPYNSK 651
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 65.3 bits (152), Expect = 9e-12
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Frame = +1
Query: 1 FQNNCEYKNGYSETDQQIRWFWETFHELPLEDKKKFLLFLTGSDRVPIQGMRDI------ 162
++NN EY +GY+ + Q++WFW E++ K L F TG+ +VP+ G +++
Sbjct: 3115 WKNNTEY-HGYNVSSPQVQWFWRAVRSFDEEERAKLLQFATGTSKVPLNGFKELEGMSGF 3173
Query: 163 -KIRI-QPVADDRFFPVAHTCFNLLDLPRYKT 252
+ I + P +HTCFN LDLP Y T
Sbjct: 3174 QRFNIHKSYGSLNRLPQSHTCFNQLDLPEYDT 3205
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 62.5 bits (145), Expect = 6e-11
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +1
Query: 52 IRWFWETFHELPLEDKKKFLLFLTGSDRVPIQGMRDIKIRIQPVA-DDRFFPVAHTCFNL 228
I WFW+ L+ +K FL+F+TGSDR+P G + ++RI + D P++HTCFN
Sbjct: 719 ILWFWDLISHYSLKMQKLFLIFVTGSDRIPATGAHNFQLRISVLGPDSDQLPISHTCFNH 778
Query: 229 LDLPRYKTK 255
L + Y ++
Sbjct: 779 LCIWEYSSR 787
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 59.3 bits (137), Expect = 6e-10
Identities = 33/84 (39%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +1
Query: 19 YKNGYSETDQQIRWFWETFHELPLEDKKKFLLFLTGSDRVPIQGMRDIK----IRIQPVA 186
Y GY I FWE E EDK+ F+ F+T R PI G + + IR+
Sbjct: 928 YAGGYEPNSPTIVLFWEVLREFEEEDKRSFVKFVTSVARPPILGFKALMPSFCIRVNG-E 986
Query: 187 DDRFFPVAHTCFNLLDLPRYKTKR 258
D+ P A TC NLL LP Y TK+
Sbjct: 987 DETRLPTASTCVNLLKLPMYSTKQ 1010
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 41.1 bits (92), Expect = 2e-04
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Frame = +1
Query: 25 NGYSETDQQIRWFWETFHELPLEDKKKFLLFLTGSDRVPIQGMRDI--------KIRIQP 180
+GY+ I+ ++ ++++ FL F+TGS ++PI G + ++ P
Sbjct: 1542 HGYTMESPTIQRLLTLMSQMNFQEQRDFLQFITGSRKLPIGGFAGLNPPLTVVRRLNEPP 1601
Query: 181 VADDRFFPVAHTCFNLLDLPRYKT 252
D + P TC N L LP Y +
Sbjct: 1602 YVPDDYLPSVMTCVNYLKLPEYSS 1625
>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 29.5 bits (63), Expect = 0.56
Identities = 16/58 (27%), Positives = 33/58 (56%)
Frame = +1
Query: 472 SLNKRVVSIDFVPS*ILCNLCFHGSITITIKSKYCHYFILNGILTHIFHQ*IFEFGKK 645
++ K+V++I V I L F ++ + I K CH+F+ +LT +F+ +F+ ++
Sbjct: 10 AIRKKVLAIFIVLLIISAYLGFAPALPVPINDKVCHFFVF-FLLTLVFYW-VFDLSRR 65
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 196 FFPVAHTCFNLLDLPRYKTKRGSSIIFCRPFSRRRASRW 312
FF V + F P + R +F PFS+ SRW
Sbjct: 280 FFIVVYFIFGYALKPAARVSRTGRRVFSSPFSKTSPSRW 318
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 55 RWFWETFHELPLEDKKKFLLFLTGSDRVPIQGM 153
R+ W+T H LP+E + L +TGSD V G+
Sbjct: 76 RFGWDT-HGLPVEHEIDKKLGITGSDDVMAMGI 107
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 187 DDRFFPVAHTCFNLLDLPRYKTKRGSSIIFCRPFSRRRASRW 312
D+ F P H+ F+ R + + G S +SRR S W
Sbjct: 84 DNIFHPQVHSSFHSRSASRQRRRSGLSRSNATRYSRRSLSDW 125
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 624 LLVKYMCQDTI*NEIMTIFRFDRYCNG 544
L K +C D+I NEI+T+ R R NG
Sbjct: 508 LTPKTICTDSI-NEIVTVIRAHRTANG 533
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 112 LFLTGSDRVPIQGMRDIKIRIQPVADDRFFPVAHTCFN 225
LF+TG+D ++ I + + D F P A CFN
Sbjct: 104 LFITGADDKSLKVFDVESIDLVNIIDLEFLPKAICCFN 141
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,077
Number of Sequences: 5004
Number of extensions: 65165
Number of successful extensions: 173
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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