Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120045.Seq
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    29   1.0  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    27   3.2  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   5.6  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    26   5.6  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    26   5.6  
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    25   9.8  
SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate N-acetyltransfera...    25   9.8  

>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 39  SNAANMVYICIDTGSHAK-GYAVESSDTDYYIYTKCNRETFEKFIDN 176
           SN  N   I +   S  + G    +S+ DY + TKC+R    ++I++
Sbjct: 52  SNITNQTQILLPADSFPQYGSYPNNSELDYVVCTKCDRPFLSEYIED 98


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -1

Query: 764 SSCNRCFHC*KYSVHSC*YSPRCMSFTYNFKSLTFFTNNVRVSSILYTPLFLFKS 600
           S C+ C +C +Y  H C +   C+    N++    F  +V +S++  T L  + S
Sbjct: 196 SHCHLCDNCVEYLDHHCIWLNTCIG-RRNYRYYFIFLLSVVLSALYLTGLGFYTS 249


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 724 TEYFQQWKQRLQDDCT 771
           TEYF +W+Q   D+CT
Sbjct: 320 TEYFVKWRQLPYDNCT 335


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 260 ILTGKSPELGMFSKREDFKDKYGIENLQLYK 352
           IL  +S   G +    D+ D YG++ LQL++
Sbjct: 299 ILASQSNLNGTYYSISDYTDVYGVDELQLFE 329


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 671 SLTFFTNNVRVSSILYTPLFLFKSNTFKSF 582
           SL++FTNN+   + L TP  L  S +F +F
Sbjct: 561 SLSYFTNNISSVAGLETPSKLPMSKSFDTF 590


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = -1

Query: 182 LFIVDKFFKSLSITFSVNIIVGVAAFDRISLGMAARINANVHHVSSVA 39
           L IVDK  K+ ++   +N++VG+     I  G AA INA +  V ++A
Sbjct: 372 LAIVDKRTKTPNVCVWMNVVVGILCCLLIFAGEAA-INA-IFSVGAIA 417


>SPAC16E8.03 |gna1|spgna1|glucosamine-phosphate
           N-acetyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = +2

Query: 350 KFVTKLMTVSMVKIIYNLMRYKIL 421
           K + KLM ++++K+ ++L  YK++
Sbjct: 56  KAIGKLMVLTLIKLAFSLNSYKVI 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,266,085
Number of Sequences: 5004
Number of extensions: 66729
Number of successful extensions: 196
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)