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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060089.seq
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    97   3e-21
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    62   1e-10
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    59   5e-10
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    48   1e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    44   2e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    44   3e-05
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    41   1e-04
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    40   3e-04
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    40   5e-04
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha...    39   8e-04
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    39   8e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    38   0.001
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    37   0.002
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    37   0.002
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    37   0.002
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    37   0.003
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    36   0.007
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    34   0.017
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    34   0.017
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    33   0.052
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    31   0.12 
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    31   0.12 
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    31   0.12 
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    31   0.16 
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    29   0.64 
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    26   5.9  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   7.9  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   7.9  

>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 96.7 bits (230), Expect = 3e-21
 Identities = 43/87 (49%), Positives = 55/87 (63%)
 Frame = +3

Query: 255 WDSVSLQPFNKNFYDPHPTVLKRSPYEVEXYRNNHEVTVSGVEVXNPIQYFEEANFPDYV 434
           W + +L PF K+FY  H  V  RS  EV  YR   E+ V G+ V  P+  FEEA FP+YV
Sbjct: 74  WKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYV 133

Query: 435 QQGVKTMGYKEPTPIQAQGWPIAMSER 515
            + VK +G++ PTPIQ Q WP+AMS R
Sbjct: 134 LKEVKQLGFEAPTPIQQQAWPMAMSGR 160



 Score = 75.8 bits (178), Expect = 6e-15
 Identities = 37/51 (72%), Positives = 39/51 (76%)
 Frame = +1

Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVAADF 687
           TGSGKTL+Y LPAIVHIN QP +  GDGPI LVLAPTRELA  IQQ    F
Sbjct: 168 TGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKF 218


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 25/45 (55%), Positives = 36/45 (80%)
 Frame = +1

Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXI 666
           +TGSGKT+A++LP   HI +Q P++ G+GPIA+++ PTRELA  I
Sbjct: 463 KTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQI 507



 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
 Frame = +3

Query: 264 VSLQPFNKNFYDPHPTVLKRSPYEVEXYRNNHE-VTVSGVEVXNPIQYFEEANFPDYVQQ 440
           ++ + F K+FY     +   SP EV+  R + + + + G++   P+  + +         
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431

Query: 441 GVKTMGYKEPTPIQAQGWPIAMSER 515
            + ++GY++PT IQAQ  P   S R
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGR 456


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 59.3 bits (137), Expect = 5e-10
 Identities = 31/59 (52%), Positives = 40/59 (67%), Gaps = 3/59 (5%)
 Frame = +1

Query: 502 LCRKEFSWRXQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQXIQ 669
           L RK+     +TGSGKT A+I+P I+ I+  PP+   +   GP A+VLAPTRELAQ IQ
Sbjct: 284 LQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342



 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 16/63 (25%), Positives = 36/63 (57%)
 Frame = +3

Query: 327 PYEVEXYRNNHEVTVSGVEVXNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 506
           P +    + ++ +++ G ++ NP++ +EEA  P  + + +K + YKEP+ IQ    P+ +
Sbjct: 225 PRDWRILKEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLL 284

Query: 507 SER 515
             +
Sbjct: 285 QRK 287


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
 Frame = +1

Query: 532 QTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTRELAQXIQQVA 678
           QTGSGKTLAY+LP +  +   P     R  G  A+++APTREL Q I  VA
Sbjct: 186 QTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVA 236


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +1

Query: 511 KEFSWRXQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQXIQQV 675
           K+   + +TGSGKT AY++P +  +  Q  I     G  AL+L PTRELAQ +  V
Sbjct: 52  KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 24/50 (48%), Positives = 30/50 (60%)
 Frame = +1

Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVAAD 684
           TGSGKTLAY+LP    +  +     G G  AL++APTRELA  I  V  +
Sbjct: 47  TGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94



 Score = 29.5 bits (63), Expect = 0.48
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
           F+  N   +++  V   G+K+ TP+QA   P+ +  +
Sbjct: 3   FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNK 39


>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 25/48 (52%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +1

Query: 532 QTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQXIQQ 672
           QTGSGKT A+ LP I  + NN  P        A+VLAPTRELA  I +
Sbjct: 91  QTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISE 132



 Score = 32.3 bits (70), Expect = 0.068
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
           F+E    D + +  + +G+K PTPIQ +  P+ +++R
Sbjct: 48  FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKR 84


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 21/52 (40%), Positives = 30/52 (57%)
 Frame = +1

Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVAADF 687
           +TGSGKT A+++P I H+ +           AL+L+P RELA    +V  DF
Sbjct: 114 RTGSGKTAAFVIPMIEHLKS---TLANSNTRALILSPNRELALQTVKVVKDF 162


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 22/42 (52%), Positives = 30/42 (71%)
 Frame = +1

Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 657
           +TGSGKTLA+I+P I ++  +      DG  ALV++PTRELA
Sbjct: 84  KTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELA 124


>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 453

 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +1

Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA-QXIQQVAA 681
           +TGSGKT A+ LP I   +  P      G  AL+L PTRELA Q  +Q AA
Sbjct: 52  KTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFAA 97


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = +3

Query: 393 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
           PI  F+E +    +++G+K   YKEPTPIQA  WP  ++ R
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGR 203



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 19/42 (45%), Positives = 29/42 (69%)
 Frame = +1

Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 657
           +TGSGKT+A+ +PA+ ++N     +    P  LV++PTRELA
Sbjct: 210 ETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELA 249


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 24/84 (28%), Positives = 43/84 (51%)
 Frame = +1

Query: 427 IMCNKV*RQWVTKNRRLFKLKAGR*LCRKEFSWRXQTGSGKTLAYILPAIVHINNQPPIR 606
           I+C  + +Q +T+   + +        +++      TGSGKT+AY+ P +  +    P  
Sbjct: 56  ILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP-- 113

Query: 607 RGDGPIALVLAPTRELAQXIQQVA 678
              G  A+++APTREL + I + A
Sbjct: 114 --GGYRAIIVAPTRELCEQIYRQA 135


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
 Frame = +1

Query: 532 QTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQXIQQVAAD 684
           +TGSGKTLA+++P I  ++     P R G G   ++++PTRELA  I  VA +
Sbjct: 134 KTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVAKE 183


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +1

Query: 526 RXQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQXIQQ 672
           +  TGSGKTLA+ +P + H      +R  D     ALV+APTRELA  I Q
Sbjct: 165 KADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQ 210


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 363 VTVSGVEVXNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSER 515
           V VSG ++  P+  F       ++ Q +K  GY +PTP+Q    PI  S R
Sbjct: 158 VEVSGGDI-EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGR 207



 Score = 29.9 bits (64), Expect = 0.36
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 13/65 (20%)
 Frame = +1

Query: 532 QTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQXIQQ 672
           QTGSGKT  ++ P + +  +  P   P+ +  G         P  L+LAPTREL   I +
Sbjct: 214 QTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHE 273

Query: 673 VAADF 687
            +  F
Sbjct: 274 ESRKF 278


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 20/48 (41%), Positives = 28/48 (58%)
 Frame = +1

Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVA 678
           TGSGKT A+I+P +  +  +P  ++      L+L PTRELA     VA
Sbjct: 305 TGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVA 350


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = +1

Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVA 678
           +TG+GKTLA++L A   +    P        +++L+PTRELA  I + A
Sbjct: 84  KTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEA 132


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 20/48 (41%), Positives = 31/48 (64%)
 Frame = +1

Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQV 675
           Q+G+GKT  + +  +  I+    +++     AL+LAPTRELAQ IQ+V
Sbjct: 64  QSGTGKTATFSISVLQKIDTS--LKQCQ---ALILAPTRELAQQIQKV 106


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +1

Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQVAAD 684
           Q+G+GKT A+ L  +  ++   P      P A+ LAP+RELA+ I  V  +
Sbjct: 161 QSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTE 206


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 32.7 bits (71), Expect = 0.052
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = +1

Query: 526 RXQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQV 675
           R + G+GKT A+++P++  ++ +    +      L+L PTRELA    QV
Sbjct: 87  RAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTRELALQTSQV 131



 Score = 30.3 bits (65), Expect = 0.28
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 405 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSERI*LAXS-NG 539
           FE+      +  G+   G++ P+PIQ +  PIA+S R  LA + NG
Sbjct: 46  FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNG 91


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +1

Query: 535 TGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTREL 654
           TGSGKTL+Y++P +  ++++  P +R       +V+ PTREL
Sbjct: 182 TGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTREL 217


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 535  TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 660
            TG GK+L++++PA++    Q P  +    + LVL P   L Q
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQ 1255


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 535  TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 660
            TG GK+L++++PA++    Q P  +    + LVL P   L Q
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQ 1255


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 354 NHEVTVSGVEVXNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 488
           N E+T S  E  N +  FEE N  + + +G+   GY+ P+ +Q++
Sbjct: 8   NVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50



 Score = 28.7 bits (61), Expect = 0.84
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = +1

Query: 532 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQXIQQV 675
           Q+G+GKT  + +  +  I+    +R      AL+L+PTRELA  IQ V
Sbjct: 66  QSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNV 108


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 9/37 (24%), Positives = 23/37 (62%)
 Frame = +2

Query: 158 RLDLATVAVDLEDLEDLVGKKNSLEVRTCVAQMGFCF 268
           + D++ +   +  + +    +NS+++ +C+ Q+GFCF
Sbjct: 274 KFDISLIMALISAIINKTASQNSIKIISCLYQVGFCF 310


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -3

Query: 102 IIPVTR-HDXFSDLVEDVYLNYGFFLTQ 22
           ++PVT+  +   D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 535 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 660
           TG GK+L Y LPA++    +    RG   + LV++P   L Q
Sbjct: 543 TGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
 Frame = -3

Query: 456 PLSLHLVAHNQENL--LLQSIE 397
           PL LH+V+HN+++L   LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,547,009
Number of Sequences: 5004
Number of extensions: 49306
Number of successful extensions: 170
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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