Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021011
(753 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 110 2e-25
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 82 1e-16
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 65 1e-11
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 54 2e-08
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 54 3e-08
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 52 9e-08
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 51 2e-07
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 50 4e-07
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 49 6e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 46 4e-06
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 46 6e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 46 6e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 44 2e-05
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 44 3e-05
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 43 5e-05
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 42 7e-05
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 42 1e-04
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 41 2e-04
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 41 2e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 40 3e-04
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 36 0.008
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.025
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 33 0.044
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 32 0.10
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 32 0.10
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 27 2.2
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 27 2.9
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 27 3.8
SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 5.0
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 8.8
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 25 8.8
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 8.8
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 110 bits (264), Expect = 2e-25
Identities = 52/75 (69%), Positives = 58/75 (77%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 706
TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQQ FG +S +RNT
Sbjct: 168 TGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNT 227
Query: 707 CVFGGAPKREQARDL 751
CV+GG P+ Q RDL
Sbjct: 228 CVYGGVPRGPQIRDL 242
Score = 97.5 bits (232), Expect = 2e-21
Identities = 43/83 (51%), Positives = 55/83 (66%)
Frame = +1
Query: 259 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQGV 438
+L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 439 KTMGYKEPTPIQAQGWPIAMSGK 507
K +G++ PTPIQ Q WP+AMSG+
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGR 160
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 81.8 bits (193), Expect = 1e-16
Identities = 36/76 (47%), Positives = 52/76 (68%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
+TGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI + F +R
Sbjct: 463 KTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRA 522
Query: 704 TCVFGGAPKREQARDL 751
C +GGAP ++Q DL
Sbjct: 523 CCAYGGAPIKDQIADL 538
Score = 48.4 bits (110), Expect = 1e-06
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQXFEEANFPDYVQQ 432
++ + F K+FY + SP EV+E R + + + + G++ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 433 GVKTMGYKEPTPIQAQGWPIAMSGK 507
+ ++GY++PT IQAQ P SG+
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGR 456
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 64.9 bits (151), Expect = 1e-11
Identities = 36/76 (47%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHTSY 694
+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ F
Sbjct: 294 ETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLG 353
Query: 695 VRNTCVFGGAPKREQA 742
R V GG EQ+
Sbjct: 354 FRCVSVVGGHAFEEQS 369
Score = 42.7 bits (96), Expect = 5e-05
Identities = 16/56 (28%), Positives = 34/56 (60%)
Frame = +1
Query: 340 RNNHEVTVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRK 287
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 54.4 bits (125), Expect = 2e-08
Identities = 30/74 (40%), Positives = 45/74 (60%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
+TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q + + ++
Sbjct: 210 ETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQTYENLNSLIQGTNLKA 267
Query: 704 TCVFGGAPKREQAR 745
V+GGAPK EQAR
Sbjct: 268 VVVYGGAPKSEQAR 281
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +1
Query: 385 PIQXFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
PI F+E + +++G+K YKEPTPIQA WP ++G+
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGR 203
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 53.6 bits (123), Expect = 3e-08
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 6/80 (7%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTRELAQQIQQVAADFGH---T 688
QTGSGKTLAY+LP + + P R G A+++APTREL QQI VA + +
Sbjct: 186 QTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLS 245
Query: 689 SYVRNTCVFGGAPKR-EQAR 745
++ + V GG K+ E+AR
Sbjct: 246 HWIVSCNVIGGEKKKSEKAR 265
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 52.0 bits (119), Expect = 9e-08
Identities = 27/72 (37%), Positives = 40/72 (55%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
+TGSGKT A+++P I H+ + AL+L+P RELA Q +V DF + +R+
Sbjct: 114 RTGSGKTAAFVIPMIEHLKST---LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRS 170
Query: 704 TCVFGGAPKREQ 739
+ GG EQ
Sbjct: 171 VAIVGGVSLEEQ 182
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
F+ + + + G+K PTPIQ + P+ + G+
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGR 107
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 50.8 bits (116), Expect = 2e-07
Identities = 33/74 (44%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 700
QTGSGKT A+ LP I + NN P A+VLAPTRELA QI + G + VR
Sbjct: 91 QTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVR 144
Query: 701 NTCVFGGAPKREQA 742
+ + GG QA
Sbjct: 145 SVVIVGGMDMVTQA 158
Score = 29.9 bits (64), Expect = 0.41
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 501
F+E D + + + +G+K PTPIQ + P+ ++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLN 82
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 50.0 bits (114), Expect = 4e-07
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 13/89 (14%)
Frame = +2
Query: 524 QTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQQ 664
QTGSGKT ++ P + + + P P+ + G P L+LAPTREL QI +
Sbjct: 214 QTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHE 273
Query: 665 VAADFGHTSYVRNTCVFGGAPKREQARDL 751
+ F + S+VR V+GGA R Q R +
Sbjct: 274 ESRKFCYRSWVRPCAVYGGADIRAQIRQI 302
Score = 39.5 bits (88), Expect = 5e-04
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 355 VTVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG+
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGR 207
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 49.2 bits (112), Expect = 6e-07
Identities = 30/76 (39%), Positives = 40/76 (52%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
+TGSGKT A+ LP I + P G AL+L PTRELA QI + A G +++
Sbjct: 52 KTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFAALGANLNLKH 106
Query: 704 TCVFGGAPKREQARDL 751
+ GG Q+ DL
Sbjct: 107 ALIVGGMDMIRQSIDL 122
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 46.4 bits (105), Expect = 4e-06
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 667
+ +TGSGKT AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 57 QARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
Score = 30.3 bits (65), Expect = 0.31
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +1
Query: 367 GVEVHNPIQXFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGK 52
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 46.0 bits (104), Expect = 6e-06
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Frame = +2
Query: 524 QTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 697
+TGSGKTLA+++P I ++ P R G G I +++PTRELA QI VA + +
Sbjct: 134 KTGSGKTLAFLIPTIEMLYALKFKP-RNGTGVI--IISPTRELALQIFGVAKELLKYHHQ 190
Query: 698 RNTCVFGGAPKREQARDL 751
V GGA +R +A L
Sbjct: 191 TFGIVIGGANRRAEADKL 208
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 46.0 bits (104), Expect = 6e-06
Identities = 25/50 (50%), Positives = 31/50 (62%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 676
TGSGKTLAY+LP + + G G AL++APTRELA QI V +
Sbjct: 47 TGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
Score = 30.7 bits (66), Expect = 0.23
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
F+ N +++ V G+K+ TP+QA P+ + K
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNK 39
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 44.4 bits (100), Expect = 2e-05
Identities = 28/76 (36%), Positives = 40/76 (52%)
Frame = +2
Query: 524 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 703
+TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 84 KTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIGRLHSFSA 142
Query: 704 TCVFGGAPKREQARDL 751
+ GG +E+ L
Sbjct: 143 GLIIGGNNYKEEKERL 158
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 43.6 bits (98), Expect = 3e-05
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 697
+ +TG+GKTLA++L A + P +++L+PTRELA QI + A + + +
Sbjct: 82 QAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGI 141
Query: 698 RNTCVFGGAPKREQ 739
R + GG K +
Sbjct: 142 RVSYAIGGNSKMRE 155
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 42.7 bits (96), Expect = 5e-05
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQQIQQVAADFGHTS 691
+ TGSGKTLA+ +P + H +R D ALV+APTRELA QI Q +
Sbjct: 165 KADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQHFELIKPSP 219
Query: 692 YVRNTCVFGGAPKREQAR 745
+R + GG ++Q R
Sbjct: 220 NIRVMSITGGLAVQKQQR 237
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 42.3 bits (95), Expect = 7e-05
Identities = 25/75 (33%), Positives = 38/75 (50%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 706
TGSGKT A+I+P + + +P ++ L+L PTRELA Q VA + +
Sbjct: 305 TGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVC 362
Query: 707 CVFGGAPKREQARDL 751
GG + Q ++L
Sbjct: 363 LCIGGLSLKLQEQEL 377
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 41.5 bits (93), Expect = 1e-04
Identities = 26/73 (35%), Positives = 39/73 (53%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 697
+ Q+G+GKT + + + I+ +++ AL+LAPTRELAQQIQ+V G V
Sbjct: 62 QAQSGTGKTATFSISVLQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNV 116
Query: 698 RNTCVFGGAPKRE 736
GG R+
Sbjct: 117 ECHACIGGTLVRD 129
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 697
R + G+GKT A+++P++ ++ + + L+L PTRELA Q QV G V
Sbjct: 87 RAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTRELALQTSQVCKTLGKHMNV 141
Query: 698 RNTCVFGGAPKRE 736
+ GG R+
Sbjct: 142 KVMVTTGGTTLRD 154
Score = 31.9 bits (69), Expect = 0.10
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 519
FE+ + G+ G++ P+PIQ + PIA+SG+ LA
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILA 86
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 40.7 bits (91), Expect = 2e-04
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 697
++Q+G+GKT A+ L + ++ P P A+ LAP+RELA+QI V + G + V
Sbjct: 159 QSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEV 213
Query: 698 R 700
+
Sbjct: 214 K 214
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 670
TGSGKT+AY+ P + + P G A+++APTREL +QI + A
Sbjct: 92 TGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYRQA 135
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 35.5 bits (78), Expect = 0.008
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSY 694
+ Q+G+GKT + + + I+ +R AL+L+PTRELA QIQ V G H +
Sbjct: 64 QAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDHMNV 118
Query: 695 VRNTCVFG 718
+ C+ G
Sbjct: 119 QCHACIGG 126
Score = 32.7 bits (71), Expect = 0.058
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +1
Query: 331 EEYRNNHEVTVSGVEVHNPIQXFEEANFPDYVQQGVKTMGYKEPTPIQAQ 480
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 33.9 bits (74), Expect = 0.025
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 658
TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 182 TGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 33.1 bits (72), Expect = 0.044
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 518 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA-LVLAPTRELAQQIQQVAADFG-HTS 691
+ ++G GKT ++L + I P+ DG ++ LVL TRELA QI+ A F +
Sbjct: 94 QAKSGMGKTAVFVLSTLQQIE---PV---DGEVSVLVLCHTRELAFQIKNEYARFSKYLP 147
Query: 692 YVRNTCVFGG 721
VR +GG
Sbjct: 148 DVRTAVFYGG 157
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.9 bits (69), Expect = 0.10
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 658
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.9 bits (69), Expect = 0.10
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 658
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 27.5 bits (58), Expect = 2.2
Identities = 8/37 (21%), Positives = 22/37 (59%)
Frame = +3
Query: 150 RLDLATVAVDLEDLEDLVGKKNSLEVRTCVAQIGICF 260
+ D++ + + + + +NS+++ +C+ Q+G CF
Sbjct: 274 KFDISLIMALISAIINKTASQNSIKIISCLYQVGFCF 310
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Frame = +1
Query: 226 SEHASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEY------RNNHEVTVSGVEVHNP 387
++ A R+G + +Q F + F+D P + + + NH+ V+ V+ P
Sbjct: 255 TKSAVMRIGLLEMQKFGRMFFDCKPLTMSEESCGIADLITTCLGGRNHKCAVAFVKTGKP 314
Query: 388 IQXFEEANFPDYVQQGVKT 444
+ E+ QG T
Sbjct: 315 MHVVEQELLDGQKLQGAAT 333
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Frame = +1
Query: 520 YSNGFRQNVGLHLASHC-------AHKQPTAYSER*WSDCFGLGAYQRVSTTNSASCCRF 678
Y GF + G + HC H++ AY E F Y R++T + C R
Sbjct: 30 YLLGFSCSTGEKIFEHCYRDNINEKHREAAAYGEAIRQVAFSKD-YSRMATVSEDKCLRL 88
Query: 679 W 681
W
Sbjct: 89 W 89
>SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 542 FCRNPFEYAN*IFPDIAIGQP 480
FC NP N +FP IAI P
Sbjct: 50 FCINPKSIRNFLFPPIAISDP 70
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 337 YRNNHEVTVSGVEVHNPIQXFE 402
Y N+ + G EVHNP FE
Sbjct: 290 YMNSESQNLLGDEVHNPFSDFE 311
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = -1
Query: 522 VRQLNLSRHSYRPALSLNRRRFFVT--HCLYTLLHIIRKICFFKXLNRIMNLNATYSYLV 349
V +L+ + H +L R FV H L ++ + F K ++ + + SY++
Sbjct: 675 VNRLSTTGHFLAYTANLERDGVFVIADHTLSENPEALKALLFSKDISNLETIQQNCSYVL 734
Query: 348 IISVLFDFIW 319
I+ + +W
Sbjct: 735 ILCPVHPIVW 744
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 652
TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 543 TGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,598
Number of Sequences: 5004
Number of extensions: 60331
Number of successful extensions: 207
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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