Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A13
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...   213   2e-56
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    28   1.5  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   2.7  
SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe...    26   8.2  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   8.2  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   8.2  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score =  213 bits (521), Expect = 2e-56
 Identities = 94/154 (61%), Positives = 118/154 (76%), Gaps = 1/154 (0%)
 Frame = +3

Query: 330 RIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVR 509
           RIPERVVHAKG+GAFG FE T DITKY+   +F  +GK+TP+  RFSTVGGE G+ DT R
Sbjct: 53  RIPERVVHAKGSGAFGEFECTDDITKYTKHTMFSKVGKKTPMVARFSTVGGERGTPDTAR 112

Query: 510 DPRGFAVKFYTDDGVWDLVGNNTPIFFIRDPTLFPSFIHTQKRNPXTHLKDPDMFWDLLT 689
           DPRGFA+KFYTD+G++D+VGNNTP+FF+RDP  FP FIHTQKRNP   +KD  MFWD L+
Sbjct: 113 DPRGFALKFYTDEGIFDMVGNNTPVFFLRDPAKFPLFIHTQKRNPQNDMKDATMFWDYLS 172

Query: 690 LRPETIHHLLYLFGXRGYS*W-LRXMNGYGSHTF 788
              E+IH ++ LF   G + +  R M+G+ SHT+
Sbjct: 173 QNAESIHQVMILFSDLGGTPYSYRFMDGFSSHTY 206



 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = +2

Query: 209 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDR 325
           TT +G P+    A   VGK GP LLQD + +D    FDR
Sbjct: 13  TTNTGCPIFNPMAAARVGKGGPVLLQDSHLIDVFQHFDR 51


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 588 FIRDPTLFPSFIHTQKRNPXTHLKDP 665
           +++DPTL P F+HT  R   T   +P
Sbjct: 506 WVKDPTLTPKFLHTSYRAVQTDNDNP 531


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 528 QQNLEGHEQYQQIHSLHQLLRI*QQSVSFCL-WTQILWQHCTW 403
           ++  E +E+Y+Q+  +         SV + + W Q+L+  CTW
Sbjct: 278 ERKRENYEEYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTW 320


>SPAC869.06c |||cation binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +2

Query: 548 WSVGFSWK*YSHFLYKRSNIIPEFYPYSEEKPXHTSERSRH 670
           W   F W+   H + +   + P+F  Y  E+    +E+ RH
Sbjct: 56  WQNQFVWELARHSVGEEIVVYPKFEKYLGEEGKEMAEKDRH 96


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 285 RMLTFLMKCHPLTGXRIPERVVH 353
           + +TFL+   P  G RIP   VH
Sbjct: 123 KTVTFLLTAQPYNGPRIPNASVH 145


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 502 VSADPLSPPTVENLTAIGVLLPMDSNTL 419
           VS +P +    +NLTAIGV  P+D+N +
Sbjct: 142 VSINPYNFSAFQNLTAIGV--PLDANNV 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,434,652
Number of Sequences: 5004
Number of extensions: 72025
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)