Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A12
         (1062 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    29   1.5  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    27   4.5  

>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = -2

Query: 242 PSDKVVNIARVSD*P*KLAGDRILLCVTRRHRNLSVHAXQGVQRDN-NTLEYILNCDR 72
           P+DKVV +   +  P K A   +L C  R+ R+LSV   + ++RD+  + +++L  +R
Sbjct: 70  PADKVVEVVEKALGPHKSA---LLHCAIRQSRSLSVGNTRSLKRDSRGSSDHLLTRNR 124


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = -1

Query: 588 RPSVTELLRDHSAS*QVSILTKIPHAGS*CFDPSAATNLPVQVNSSPWRSHWPSLDDHRN 409
           R +   LL+D     ++++ TK         D     NL  Q  S+P    W ++ D  N
Sbjct: 409 RDAFRALLQDLRVQKKITLRTKWKELYPIIKDDPRYLNLLGQSGSTPLDLFWDTIVDLEN 468

Query: 408 WYXRLQXLILWC 373
            Y   + L+L C
Sbjct: 469 MYREKRNLVLDC 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,207,719
Number of Sequences: 5004
Number of extensions: 60537
Number of successful extensions: 142
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 559212080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)