Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_A19
(592 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.67
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 28 1.2
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 27 1.5
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 26 4.7
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 26 4.7
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 4.7
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 6.2
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 8.3
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 8.3
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 8.3
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 28.7 bits (61), Expect = 0.67
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 104 ILQLSSAMILMDSFYQLLMKFIHNSSLIWTLYLRFI 211
++ L+ A L + YQ S +WTLYL F+
Sbjct: 143 VITLTDAHSLFERAYQTCKFHFSKSQCVWTLYLEFL 178
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +2
Query: 440 LSIAVAKYITISTNN*QHVITSSVLQTAWVPYLNSLG 550
LSI+ AK TI + + + S++L T+W+ +LNS+G
Sbjct: 3546 LSISSAKLSTICRSVLKASVNSALL-TSWICFLNSIG 3581
>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 629
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +1
Query: 169 PQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTF 318
P F ++D L +YR+K +D HD K+ ++ EE+ Y+ ++ + + F
Sbjct: 116 PSQFSSID-LSWVYRSKEEDDDFHDPKSSVVSLMGEED-YLGWSRFCDLF 163
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 4.7
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 181 VNMDTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEEQRLTY 351
+NMD LL Y TK D + +NY ++ Y + N ++F+ +++RL +
Sbjct: 289 MNMDILLDSYLTKAMDIHATFIQKLNYDLI--NLLYEPFHNIYSSFIKPIDDRRLEF 343
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 190 DTLLKIYRTKMQDG-ILHDAKAINYGIVKEEEQYVYYANYS 309
D + I R K G + HD +NY ++ E++ + N S
Sbjct: 83 DNFVNIIRRKSGGGTVFHDFGNLNYSVLMNREEFSHTENAS 123
>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 128
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = -2
Query: 327 IVKESVGIVG-VIHI-LLFLFYNSIINSLCIVKN 232
+ KE I+ +++I ++FLF N +++ +C VKN
Sbjct: 22 VAKEKYKIIHRLLYISIIFLFLNYVVDIVCYVKN 55
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -2
Query: 279 FLFYNSIIN-SLCIVKNTVLHFSAINLK*SVHINEE 175
FLF N N SLC ++T F + S+HI E
Sbjct: 699 FLFSNGSCNTSLCYYESTDPDFGGLKTPMSIHIERE 734
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 469 NFYQQLTTRYYFERLTNGLGSIPEF 543
NFY + YF T G+ S+P F
Sbjct: 126 NFYPPIQNSTYFINATGGIDSMPYF 150
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.0 bits (52), Expect = 8.3
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +1
Query: 400 HLPFWWSSERYGNLKHRRGEI-YYNFYQQLTTRYYFERLTNGLGSIPEFSWYSP 558
H FWWS + NL E+ NF L FE N + EFS SP
Sbjct: 118 HQKFWWSLRKKRNLPKENSELDLSNFQDDLD----FE---NSISQKNEFSQKSP 164
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +1
Query: 76 NEGQFL-YAYYIAVIQRNDTHG 138
N G FL YA++ VI+ D+HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,112
Number of Sequences: 5004
Number of extensions: 51419
Number of successful extensions: 151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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