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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_A16
         (343 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    31   0.065
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   0.60 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   0.60 
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    27   1.1  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    26   1.4  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    25   2.4  
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    25   3.2  
SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   3.2  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    25   3.2  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   3.2  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   4.3  
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    25   4.3  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    23   9.8  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    23   9.8  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    23   9.8  

>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 30.7 bits (66), Expect = 0.065
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -2

Query: 246 SFTSGSLNVTNNISLISCDFSLSTISMMASTFSFTCSILNSTDLVSSITNVKLLDLI 76
           SF   S+++ N+ S+ SC  S S   M++S   F C +  S         +K L  I
Sbjct: 256 SFLDLSIDIENHTSVTSCLRSFSASEMLSSKNKFHCDVCKSLQEAEKRMKIKKLPKI 312


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 0.60
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 246 SFTSGSLNVTNNISLISCDFSLSTISMMASTFSFTCSILNST 121
           S  S SLN T + +  S   S +  S  A++ S   S LNST
Sbjct: 194 SLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNST 235


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 0.60
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = -2

Query: 240 TSGSLNVTNNISLISCDFSLSTISMMASTFSFTCSILNSTDLVSSITNVKL 88
           TS S + +++I+ IS   S S+I    STFS   SIL+S+    S T++ +
Sbjct: 547 TSSSSDFSSSITTISSGISSSSIP---STFSSVSSILSSSTSSPSSTSLSI 594


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +2

Query: 35  PILKCLLILVHLNLMRSSSLT 97
           P+L+C+ I  HL+ +R+SSL+
Sbjct: 507 PVLRCMDIQFHLDRLRNSSLS 527


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 19/66 (28%), Positives = 35/66 (53%)
 Frame = +2

Query: 89  SLTFVIDDTRSVLFNIEQVKENVDAIMDIVLKEKSHEIKDMLLVTFNDPDVKLRVKTSSR 268
           SLTF  D   SVL + E V++ +  ++ ++    S ++ D  ++   DP +   +K   R
Sbjct: 325 SLTFCHD---SVLQDSE-VRQKIAGLVSLI--HNSPKMFDETMLFAGDPSISTALKEDFR 378

Query: 269 QEFKSV 286
           + FK+V
Sbjct: 379 EHFKTV 384


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 146 KENVDAIMDIVLKEKSHEIK 205
           KEN +A+M+ VLK K + IK
Sbjct: 724 KENFEALMNSVLKVKENSIK 743


>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 68  LNLMRSSSLTFVIDDTRSVLFNIEQVKEN 154
           LN +   ++ + IDD   V   IE+VKE+
Sbjct: 43  LNELEGPAVIYKIDDDAGVSLGIEEVKES 71


>SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 182

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -2

Query: 189 FSLSTISMMASTFSFTCSILNSTDLVSSITNVKLLDLIKLRCTKINRHF-NIGNILRRK 16
           F + TIS +   ++  CS+ ++    +SI+N    +   +   K+ R+F ++G I   K
Sbjct: 30  FDMITISTIFKLYNQICSLSSTDRKKTSISNKLQQEFCIMDINKVGRNFISLGKIRSSK 88


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 141 CSILNSTDLVSS-ITNVKLLDLIKLRC 64
           C ILN TDL+SS   +V    ++K+ C
Sbjct: 214 CLILNKTDLISSEALSVVRQTILKINC 240


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
 Frame = -2

Query: 258 VFTLSFTSGSLNVTNNISLISCDFSLSTISMMAS-TFSFT-CSILNSTD--------LVS 109
           V  +S +     V   I  I+  F  S I  +    +  T  SILNS D        L  
Sbjct: 108 VIEVSLSLNLSEVVYMIQFITLCFQFSNIEKLRKLVYQLTNISILNSLDNLDKVKYLLHD 167

Query: 108 SITNVKLLDLIKLRCTKINRHFNIGNILRRKIHSM 4
           S +  K  D  K +   I   F + N+L R IHS+
Sbjct: 168 SSSLTKAFDSYKEKRPSIVEKFPLHNLLSRWIHSL 202


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 261 LVFTLSFTSGSLNVTNNISLISCDFSLSTISMMASTFSFTCSILNSTD 118
           +V   S TS S+N  +  S  +  +  ST S+ +S F+ T S  NST+
Sbjct: 331 VVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSSSNSTN 378


>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 204 LISCDFSLSTISMMASTFSFTCSILNSTDLVSSITN-VKLLDLIKLR 67
           L+SC   L+TI      F   CS L + +      N ++ L L+++R
Sbjct: 94  LVSCCLQLATIYEAEQNFELLCSSLEAVEKHGHFENDLEQLLLLRIR 140


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 228 LNVTNNISLISCDFSLSTISMMASTFSFTCSILNSTDLVS 109
           L V+  I+ I+C   L   S M S      S +NS+   S
Sbjct: 115 LGVSKPITFIACILQLGGTSFMESELQTKLSTINSSPFKS 154


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 190 FLFEYYIHDGVNIFLHLFDIEQYRSSI 110
           F+++   HD + ++   FD+  YR  I
Sbjct: 45  FMYQSVGHDVIPLYAECFDLPLYREKI 71


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 95  TFVIDDTRSVLFNIEQVKENVDAI 166
           TF+ +  R  LF ++ ++EN+D +
Sbjct: 3   TFIKNWKRITLFQVKAIEENIDRL 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,309,344
Number of Sequences: 5004
Number of extensions: 23680
Number of successful extensions: 104
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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