Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A13
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    28   1.5  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    27   3.5  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.1  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   8.1  

>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 144 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNR 46
           Y    ES + D+ +  SH+ A +I Q  R+G R
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
 Frame = -1

Query: 861 PXLQHXPLPEXSAPLPXXXXLXPEPPPXXPXHXXQXTLXXKXLP--PXXXPP 712
           P   H PL     P+     L P P P  P H    +L    LP  P   PP
Sbjct: 134 PHSHHPPL-HNPLPVSCQPVLRPPPVPQVPSHWYPVSLPSPNLPHQPISKPP 184


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 864 QPXLQHXPLPEXSAPLPXXXXLXPEPPPXXP 772
           +P L + P+PE   PLP    L  EP P  P
Sbjct: 106 EPPLPNEPVPEE--PLPGEPPLPDEPVPEEP 134


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 26   MSTTYIILLPFLLTCAIASAAECENATSLS 115
            +S TYIILLPF   C     A  +++  +S
Sbjct: 1023 LSKTYIILLPFQSLCPGGKQANHQSSEKMS 1052


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,831,522
Number of Sequences: 5004
Number of extensions: 26225
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)