Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40034
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0120 - 17422354-17422530,17423054-17423203,17423297-17423422     35   0.10 
05_04_0262 - 19514426-19515625                                         30   2.2  
03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112     29   3.8  
11_03_0068 + 9564354-9565180,9566658-9568704                           28   8.7  
02_04_0124 - 19974230-19974847                                         28   8.7  

>03_04_0120 - 17422354-17422530,17423054-17423203,17423297-17423422
          Length = 150

 Score = 34.7 bits (76), Expect = 0.10
 Identities = 19/71 (26%), Positives = 41/71 (57%)
 Frame = +3

Query: 333 KIPRSRKVNQSYFSSVFSTIYSTLITVPVIYKFKPNVIFCNGPGTCIPICVVAFILRIFF 512
           +I RSR+V QSY +S+ +T+ +T   + +I + +P V+   G  +   I  +A + ++  
Sbjct: 56  QIYRSREVGQSYITSIATTLLATSHAIWIIIRIRPQVVLGLGWSSIFYIESIARVKKLSL 115

Query: 513 YWIVELFSLKV 545
             ++ L+ L++
Sbjct: 116 SGLL-LYKLRI 125



 Score = 31.5 bits (68), Expect = 0.94
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 527 IVFIESICRVRSLSLTGKILQ--YFADLVVVHGPQLRDVSLRA 649
           I +IESI RV+ LSL+G +L     AD   V  PQL+    RA
Sbjct: 101 IFYIESIARVKKLSLSGLLLYKLRIADQFFVQWPQLQQKYPRA 143


>05_04_0262 - 19514426-19515625
          Length = 399

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 279 SESKIFEAENKQSTYLLNKIPRSRKVNQSYFSSVFSTIYSTLITVPVI--YKFKPNVI 446
           SES++FEA  KQ T LL     + K N S+F          ++  PV+  Y F+  ++
Sbjct: 276 SESEVFEAFKKQPTALLG-ADETIKKNASFFRDALKLEMREVMVHPVVMAYSFEKTIL 332


>03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112
          Length = 1372

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +1

Query: 31  IMEILSFLCLIFTALVIGVIARVIYLLIKIFTTECALYQDSNLRSIFCIG--SGGHTTEL 204
           + + +++ CL+   +  G +    Y+  +I   E  LY D    +    G   GG   E+
Sbjct: 716 VPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKE-GLYADCIAYNSMMNGYLKGGQINEI 774

Query: 205 LRFMRNLNCRKYYP 246
            R MRN++  + YP
Sbjct: 775 ERLMRNMHENEVYP 788


>11_03_0068 + 9564354-9565180,9566658-9568704
          Length = 957

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 679 LNYVSLPKYFSTKTHISQLWPMHYNKICKILENFP 575
           L  +SL    +TK    + W  + N +C   EN P
Sbjct: 373 LAIISLASLLATKPRTKEQWGRYRNSVCSATENVP 407


>02_04_0124 - 19974230-19974847
          Length = 205

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 55  CLIFTALVIGVIARVIYLLIKIFTTECALYQDSNLRSI 168
           C++   LV+G IA V+YL ++       L QD  LRS+
Sbjct: 4   CILALVLVVGFIALVVYLALRPSKPSFYL-QDLQLRSV 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,759,710
Number of Sequences: 37544
Number of extensions: 491924
Number of successful extensions: 1259
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)