Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40031
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0690 + 12990591-12990746,12990807-12990902,12991667-12992089     33   0.16 
04_03_0466 - 16243865-16244049,16244084-16244279                       29   2.6  
08_02_1563 + 27886202-27886446,27886533-27886618,27886942-278870...    28   3.5  
08_01_0126 - 1008469-1008477,1009055-1009396,1009499-1010167,101...    28   4.6  
03_04_0245 + 19317741-19317947,19318895-19318966,19319790-19319795     28   4.6  
10_08_0472 - 18154797-18155048,18155332-18156318,18156424-181565...    27   6.0  
05_03_0030 + 7529814-7530257,7530409-7530462,7531605-7532793,753...    27   6.0  

>02_02_0690 + 12990591-12990746,12990807-12990902,12991667-12992089
          Length = 224

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
 Frame = -2

Query: 384 STGVFPSSFPQLSITVTTSMSFG-KDAAAT*LMIR--LFSSSAPNFCKRNKLSSGMVRPL 214
           ST    SS   L +T+  + S   K  AA  ++I   + S + P +C+R   ++G    L
Sbjct: 77  STDSLTSSVSSLVLTIDVAASDDFKLVAAVGILITTIVVSFACPCYCRRPWTATGDGLRL 136

Query: 213 YIHRHVLLLSRLHPSRF 163
                ++L+S +HPSRF
Sbjct: 137 IFVTSIVLISSIHPSRF 153


>04_03_0466 - 16243865-16244049,16244084-16244279
          Length = 126

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 261 NFCKRNKLSSGMVRPLYIHRHVLLLSRLHPSRFH-SNTPESGLSI 130
           N    N L++ MV   Y+HR +  LSR   +R H  N P S + I
Sbjct: 38  NLLVDNGLTASMVAADYLHRRIAPLSRQDATRTHPDNLPVSVVEI 82


>08_02_1563 +
           27886202-27886446,27886533-27886618,27886942-27887030,
           27887193-27887432,27887527-27887648,27888103-27888178,
           27888276-27888383,27888465-27888641,27888959-27889176,
           27889313-27889445,27889584-27889807,27890052-27890205,
           27890297-27890380
          Length = 651

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -1

Query: 427 RRVFLEALEVFEHLIYRGISIFLSAALDNSDHVYVFRE-RRSCNLTDDSIIFIERSEFL 254
           RRV+ E+LEV + L    I ++   A+D    + V +E  ++ N+   + +F E S FL
Sbjct: 314 RRVYDESLEVAQDLQKSDIPMYRLDAIDFGRRMAVEKEIEKTENVPQPNAVFDESSNFL 372


>08_01_0126 -
           1008469-1008477,1009055-1009396,1009499-1010167,
           1010264-1010446,1010491-1010550,1010551-1010649
          Length = 453

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -1

Query: 421 VFLEALEVFEHLIYRGISIFLSAALDNSDHVYVFRERRSCNLTDDSII-FIERS 263
           V LEA++V   L       ++S+       V+   +R  C LTDDS+I +IE+S
Sbjct: 62  VLLEAVQVLADLDLSINKAYISSDGRWFMDVFHVTDRLGCKLTDDSVITYIEQS 115


>03_04_0245 + 19317741-19317947,19318895-19318966,19319790-19319795
          Length = 94

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -2

Query: 216 LYIHRHVLLLSRLHPSRFHSNTPESGLSIF*PPP 115
           L I  HVL+L    PSR  S+ P SG S+  P P
Sbjct: 24  LLISTHVLVLVHTSPSR-ESSRPPSGSSVLVPCP 56


>10_08_0472 - 18154797-18155048,18155332-18156318,18156424-18156546,
            18156654-18156808,18157611-18157824,18158977-18159077,
            18159162-18159285,18159584-18159655,18159897-18159961,
            18160167-18160233,18160917-18161015,18161099-18161167,
            18161286-18161409,18162507-18162566,18163111-18163634
          Length = 1011

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +3

Query: 129  KLKVLIQECLNENGLGEDAIEVIRAG--EYREDEPFQNLVYCAYRNSERSMKIIESSVKL 302
            +L  LI E L EN   +   E+  +G  E+ E+E +  +      N+E++  I++   K+
Sbjct: 848  QLDSLIAEPLRENIYKKSVEEIFSSGTGEFDEEEVYVKIPADLIINAEKAKSIVQDIAKI 907

Query: 303  QL 308
            +L
Sbjct: 908  RL 909


>05_03_0030 +
           7529814-7530257,7530409-7530462,7531605-7532793,
           7532861-7533522
          Length = 782

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 2   DPN*IHNDVQSIIVLRGSRSVGYYSFSGGFQETR 103
           D N +  DV S+I +  S + G+Y+  GGFQ  R
Sbjct: 286 DDNHVGIDVNSLISIN-SHTAGFYTSDGGFQLLR 318


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,748,441
Number of Sequences: 37544
Number of extensions: 271552
Number of successful extensions: 713
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)