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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40007
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0109 - 11919279-11920109                                         29   2.5  
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247     29   3.3  
12_02_0521 - 19955475-19956076,19957146-19958403                       29   4.3  
12_01_0686 - 5855216-5858263                                           29   4.3  
03_05_0292 + 22846273-22846377,22847161-22847823                       29   4.3  
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643...    29   4.3  
11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539...    28   5.7  
10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614...    28   7.5  
08_02_0263 + 15007377-15007650,15008050-15008116,15008616-150086...    28   7.5  
03_01_0517 - 3874834-3875196                                           28   7.5  
09_02_0326 + 7279991-7280053,7280239-7280422,7280706-7280779           27   9.9  
07_03_1423 + 26466550-26467110                                         27   9.9  
04_04_1482 - 33903276-33903374,33903475-33903600,33904110-339043...    27   9.9  

>06_02_0109 - 11919279-11920109
          Length = 276

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 176 PXCRELCRDSITICVWVVYCCKWSHQCRVAEDGRPGCRGDQSG 48
           P  R+  RD++    WVV+  +W H  R+     P      SG
Sbjct: 199 PLLRDDLRDALRDARWVVWYSQWYHLSRMPSPSSPQASSTSSG 241


>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
          Length = 974

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = -1

Query: 475 LICRMAVVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNGV*EPLLLEGGVPGIADDE 296
           L C + +   +   +  ++       +T   +   Q  T NG  E L   GG   ++ + 
Sbjct: 331 LACIIVLKAIISCQTYSNDRSNNVEEQTSTGNCRAQINTSNGGAESLSSNGGAESVSSNG 390

Query: 295 GAEDCSNSSSGTSYPT 248
           GAE  S SS+  + PT
Sbjct: 391 GAE--SVSSNARAQPT 404


>12_02_0521 - 19955475-19956076,19957146-19958403
          Length = 619

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
 Frame = -3

Query: 215 RVNVLSDRCGLEGPXCRELCRD---SITICVWVV--YCCKWSHQCRVAEDGRPGCRGDQS 51
           R NV S+R G        +C      +  C W+   +C  W+H      DG+ G      
Sbjct: 268 RCNVCSNRNGFCNLCMCVICNKFDFEVNTCRWIGCDFCSHWTHTDCAIRDGQIGMGQSIK 327

Query: 50  GGRQHF-VFIRCGARQQ 3
            G  H  +  RC A Q+
Sbjct: 328 SGTGHAEMLFRCQACQK 344


>12_01_0686 - 5855216-5858263
          Length = 1015

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 100 WCDHLQQYTTHTQMVMLSLHSSLQXGPSRPHRSLRTLTLL 219
           WCDH+ +YT   Q++ L  + SL         ++R+LT +
Sbjct: 233 WCDHIAKYTPKLQVLSLP-YCSLSGPVCASFAAMRSLTTI 271


>03_05_0292 + 22846273-22846377,22847161-22847823
          Length = 255

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 232 VLVQRQWDSWFRSWNWNSLRLPHHRLC 312
           VLV  +  SW R W+W   R    R+C
Sbjct: 152 VLVDERRRSWRRQWSWRRRRRRRSRMC 178


>02_02_0059 -
           6432945-6433115,6433975-6434061,6434585-6434787,
           6435281-6435392,6435473-6435517,6435622-6435726,
           6435946-6435996,6436026-6436103,6437258-6437313,
           6437784-6437853,6438288-6438392,6438525-6438637,
           6439354-6439534,6439635-6440390
          Length = 710

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +1

Query: 43  LPPD*SPLQPGLPSSATLHWCDHLQQYTTHTQMVMLSLHSSLQXGPSRPHRS--LRTLTL 216
           +PP   PL+P +PSS+  H    LQ      +  +  +HS      +RP  S  L    L
Sbjct: 183 VPPPPPPLEPPVPSSSDYHAKPPLQA----VKSSLFPIHSGSPAATARPPSSHTLHQAHL 238

Query: 217 LPNS 228
           +PN+
Sbjct: 239 MPNA 242


>11_01_0662 -
           5389746-5390548,5390727-5391368,5391624-5391659,
           5392314-5392377
          Length = 514

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 436 NSLESEEQQERHHKTEQTHSLRQ 368
           NS+   E QE+ H  E+TH LRQ
Sbjct: 62  NSIFYSESQEQKHVKEETHRLRQ 84


>10_07_0057 +
           12460986-12461036,12461108-12461161,12461420-12461482,
           12461666-12461716,12461996-12462057,12462156-12462318,
           12462829-12462939,12463029-12463166,12463248-12463322,
           12463420-12463540,12464827-12464981,12465080-12465154,
           12465270-12465473,12465670-12465786
          Length = 479

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -1

Query: 283 CSNSSSGTS-YPTVAAPAPMNLAAESMSLVTDVVWKDRTAESCVGTALP-SVYG 128
           C+ +  G S +P+V  P     AAE+M+   DV +  R  ES     +P SV+G
Sbjct: 387 CNKAEGGISVFPSVRLPPRAIEAAEAMNTEPDVFYALRLLESTGIVVVPGSVFG 440


>08_02_0263 +
           15007377-15007650,15008050-15008116,15008616-15008676,
           15008964-15009005
          Length = 147

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -1

Query: 289 EDCSNSSSGTSYPTVAAPAPMNLAAESMSLVTDVVWKDRTAESCVGTALPS 137
           E  +    G++ PTVAAPA  + A    +    +V  DR    C G A PS
Sbjct: 2   ETLAPDGGGSADPTVAAPAATDPAVAGQTEANPMVAVDRLVVVC-GCAPPS 51


>03_01_0517 - 3874834-3875196
          Length = 120

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 429 KLFTFKNTTTAILHMRFQCILSGVDSQESNVWK 527
           +L     TT      +FQC++ GV    +N WK
Sbjct: 81  RLVILAETTPGGSKAKFQCVVWGVPGSRANTWK 113


>09_02_0326 + 7279991-7280053,7280239-7280422,7280706-7280779
          Length = 106

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 306 PMMREPKTVPIPAPEPAIP 250
           P ++E KT+P+PAP  A P
Sbjct: 84  PQVKEKKTLPLPAPAAAPP 102


>07_03_1423 + 26466550-26467110
          Length = 186

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -1

Query: 286 DCSNSSSGTSYPTVAAPAPMNLAAESMSLV-TDVVWKDRTAESCVGTALP 140
           D SNS++ ++   VA+PA +  AA++ ++  T VV+ D   E    +ALP
Sbjct: 59  DFSNSTANSTSAVVASPAALLRAAKNTTIFGTTVVFNDPMTEGT--SALP 106


>04_04_1482 -
           33903276-33903374,33903475-33903600,33904110-33904351,
           33904388-33904626,33904798-33904961,33905738-33906520
          Length = 550

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/51 (31%), Positives = 20/51 (39%)
 Frame = -3

Query: 197 DRCGLEGPXCRELCRDSITICVWVVYCCKWSHQCRVAEDGRPGCRGDQSGG 45
           D  G EG    EL    I + +W+ +   WS          PG  G Q GG
Sbjct: 138 DGAGGEGKVVGELAPGEIAVLLWMCWVMAWS-------GSAPGVSGGQEGG 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,544,865
Number of Sequences: 37544
Number of extensions: 399876
Number of successful extensions: 1543
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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