Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40003
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0728 + 13416481-13416889,13416979-13417065,13417220-134173... 29 2.6
12_01_0500 + 3966456-3968556,3968640-3969087,3969524-3969718,396... 29 4.6
07_01_0781 - 6051139-6052305 28 6.0
05_04_0367 - 20672776-20673550,20674097-20674320,20674626-206748... 28 6.0
01_06_1577 - 38379951-38380167,38380349-38380543,38380919-383811... 28 6.0
12_02_0128 - 13969118-13969222,13969329-13969460,13969558-139696... 28 8.0
07_03_1562 - 27738369-27738568,27738767-27738962,27739079-277392... 28 8.0
07_03_1233 + 25057139-25057262,25058340-25058911 28 8.0
07_03_0006 + 12268852-12269146,12269362-12269487,12269536-122697... 28 8.0
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497... 28 8.0
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 28 8.0
>02_02_0728 +
13416481-13416889,13416979-13417065,13417220-13417351,
13417474-13417539,13417754-13418919
Length = 619
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 310 VQYQKTHINYHSTMLVEGMMILHPLYTNPLMEEEHG 417
++Y++ I H + L + + H ++TNPL +HG
Sbjct: 550 LRYKQYSIGVHESSLTDQYPLDHEIFTNPLSFHKHG 585
>12_01_0500 + 3966456-3968556,3968640-3969087,3969524-3969718,
3969891-3970119
Length = 990
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = -1
Query: 288 LMGLYHQPMETCSLFSSRQDLLIASRYYCCLIRVNITRRKLMLEHLEVDRVL 133
L G+YH E+ S + DLL A + L + R KL+ +EVDR+L
Sbjct: 882 LFGMYHDWCESFSTYPRSYDLLHADHLFSKLKK----RCKLLPVMVEVDRIL 929
>07_01_0781 - 6051139-6052305
Length = 388
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 674 KYQSIYQLQISPAEYNNKHTQSQDNDLHKL 585
K + + + S E N+KH Q Q++D+H+L
Sbjct: 84 KEELVAMIDQSIQEINSKHGQEQESDMHRL 113
>05_04_0367 -
20672776-20673550,20674097-20674320,20674626-20674843,
20675133-20676534
Length = 872
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 339 PQYYVGGRNDDPPSPVYQSPYGGGTW 416
P YY + P + VYQ PYG G +
Sbjct: 181 PNYYYMKASSTPANTVYQEPYGYGNF 206
>01_06_1577 -
38379951-38380167,38380349-38380543,38380919-38381191,
38381281-38381455,38381925-38382035,38382120-38382390,
38382990-38383139,38383242-38384246
Length = 798
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = -1
Query: 288 LMGLYHQPMETCSLFSSRQDLLIASRYYCCLIRVNITRRKLMLEHLEVDRVL 133
L G+YH E+ S + DLL A + L + R KL+ EVDR+L
Sbjct: 694 LFGMYHDWCESFSTYPRTYDLLHADHLFSKLKK----RCKLLPVFAEVDRIL 741
>12_02_0128 -
13969118-13969222,13969329-13969460,13969558-13969671,
13971843-13971941,13972035-13972171,13972505-13972598,
13973248-13973355,13973442-13973537,13973673-13973845,
13974818-13975172,13975308-13975442,13975524-13975667,
13975762-13976436,13976552-13976617,13976710-13976877
Length = 866
Score = 27.9 bits (59), Expect = 8.0
Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Frame = +1
Query: 172 SSRNVHSYQTTVVPRSNQQILSAAEQRASFHGLMI*THQCIRPALIVQYQKTHINYH-ST 348
S N+ + + SN+Q ++++F G ++ +C V++ +H ++ S
Sbjct: 99 SRLNITYFSNLIEGLSNEQ--RTIIEKSAF-GSLLNFQRCAILLSFVKWIASHTDFSCSD 155
Query: 349 MLVEGMMI-LHPLYTNPLMEEEHGGVTVKHKKFICKTHIVSH 471
++V G I ++P TN ++ +GG+ +KH + K H
Sbjct: 156 IVVNGRSIPINPNTTNFILGIPNGGLAIKHDNDVGKHFFHQH 197
>07_03_1562 - 27738369-27738568,27738767-27738962,27739079-27739230,
27739775-27739832,27739923-27740038,27740117-27740237,
27740348-27740635,27740817-27740987,27741091-27741741,
27742515-27742676,27742764-27743904,27743992-27744152,
27744239-27744564,27745678-27745825
Length = 1296
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 85 HSFSSCLFVENHVNKIQNSVNFKMFKHQLSSRNVHSYQTTVVPR 216
+ S F E + K+ + NFK+F+H LS +V ++ TV+ +
Sbjct: 1124 YCLSQLTFTEKGLKKLVD--NFKIFEHALSEDSVMNHFRTVIAK 1165
>07_03_1233 + 25057139-25057262,25058340-25058911
Length = 231
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1
Query: 376 HPLYTNPLMEEEHGG----VTVKHKKFICKTHIVSHNVLQHFHCHYTIRTQCSTF 528
HP + PL++ ++GG + +H IC T +V+ + HC + I C+ F
Sbjct: 57 HPQH--PLLKTQYGGGERQPSSRHVCRICGTRVVAGAGYRCDHCDFDIHEACADF 109
>07_03_0006 +
12268852-12269146,12269362-12269487,12269536-12269753,
12269918-12270292,12270376-12270610,12270698-12270861
Length = 470
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 276 INPSVYQAGTDSSISENAYQLPQYYVGGRNDDPPSPVYQSPYGG 407
++ S+ D I + Y+L Q+ VG +NDD P P+ + G
Sbjct: 358 LDHSLIPESVDVIIGDFLYEL-QFKVGPKNDDEPVPMEMDNFDG 400
>02_03_0390 +
18448671-18448889,18449567-18449632,18449702-18449761,
18449864-18449959,18452287-18452447,18452669-18452790,
18452872-18453239,18453653-18453739,18453835-18453969,
18454349-18454471,18454771-18454854,18455023-18455187,
18455310-18455486,18455660-18455773,18455912-18456016,
18457056-18457174,18457244-18457385,18457461-18457555,
18457757-18457862,18458125-18458204,18458285-18458461,
18459828-18459912,18460024-18460104,18460208-18460351,
18460468-18460563,18460654-18460854,18461462-18461895,
18462417-18462478,18462622-18462872,18462956-18463030,
18463110-18463300,18463696-18463867,18463956-18464020,
18464646-18464778,18464861-18464962,18465047-18465130,
18465656-18465730,18465818-18465877,18465967-18466223,
18466560-18466608,18466781-18466941,18467013-18467079,
18467174-18467299,18467422-18467592,18468566-18468769,
18469059-18469165,18469608-18469737,18469774-18469959,
18470704-18470742
Length = 2202
Score = 27.9 bits (59), Expect = 8.0
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Frame = -1
Query: 339 VIDMRFLILNYQCR----PDTLMGLYHQPMETCS--LFSSRQDLLIASRYYCCLIRVNIT 178
+ID+R + Y R D G ++ + S L R+DLL + + C + T
Sbjct: 223 IIDLREYDVPYHVRFAIDNDVRCGQWYDVSVSSSDVLLHRREDLLQRAEVHVCAFDIETT 282
Query: 177 RRKLMLEHLEVDRVLDFVYMI 115
+ L E D V+ YMI
Sbjct: 283 KLPLKFPDAEYDTVMMISYMI 303
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -3
Query: 412 VPPP*GDWYTGDGGSSFLPPT*YCGN*YAFSDIELSVPA*YTDG 281
VPP Y G GG PP+ Y GN SD + P+ Y G
Sbjct: 303 VPPQGPPSYGGPGGDYAAPPSSYGGNNAYNSDSAVPPPSSYGGG 346
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,634,085
Number of Sequences: 37544
Number of extensions: 404633
Number of successful extensions: 985
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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