Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10398
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0341 + 16942332-16942361,16942907-16943347                       31   0.84 
03_05_0093 + 20737614-20737812,20737848-20738059                       31   1.1  
10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018,353...    29   3.4  
10_07_0191 + 13934410-13934940                                         29   4.5  
06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849     28   5.9  
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411...    28   5.9  
01_07_0176 - 41733845-41734834,41736058-41736588                       28   7.8  

>10_08_0341 + 16942332-16942361,16942907-16943347
          Length = 156

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -1

Query: 97  TSTQSRRVCTRETPSMTSGPPPPAGDSPRT 8
           TSTQSR +  ++TP+ T  PPP  G  P T
Sbjct: 120 TSTQSRYLLAKDTPA-TLRPPPSEGTPPST 148


>03_05_0093 + 20737614-20737812,20737848-20738059
          Length = 136

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 178 ARMTAYGGTGSWSRAGRGAEFGTRFK 255
           A M   GG  SWSR+GR    G+RF+
Sbjct: 53  AMMAGKGGCFSWSRSGRQPRVGSRFR 78


>10_01_0323 +
           3530246-3530446,3531091-3531726,3531860-3532018,
           3532276-3532569,3557747-3557941,3558875-3559095,
           3559190-3559373,3559797-3559973,3561319-3561824,
           3561880-3562060
          Length = 917

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = -3

Query: 224 PARDHEPVPPYAVIRAHRHPDYKPPSKYNDIALLELDRQVPLDQYTVPA---CLHTGDAV 54
           P   H+    YA+  AHR  D    + YN I  LE D    L +  V      LH G +V
Sbjct: 634 PVLHHDHWSLYAINIAHRRVDIMDSNNYNLIGTLESDHHRALSKRIVKRLSDALHEGPSV 693


>10_07_0191 + 13934410-13934940
          Length = 176

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/47 (42%), Positives = 21/47 (44%)
 Frame = -3

Query: 242 PNSAPRPARDHEPVPPYAVIRAHRHPDYKPPSKYNDIALLELDRQVP 102
           P+SAPR A      PP A   A   P    PS     AL  LD QVP
Sbjct: 82  PSSAPRQAAFAAAAPPEATAAAAASPG--SPSTCRRTALQLLDLQVP 126


>06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849
          Length = 489

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 293 QRDIIKAIVKQKHLNLVPNSA-PRPARDHEPVPPYAVIRAHRHPDYKPPSKYNDIALLE 120
           + D+ + +     L+++P+   PRP     P PP   +  H HP ++PP ++ ++   E
Sbjct: 96  EEDVRREVAFAHGLHVLPHDPFPRPP----PPPPEMPVGMHPHP-HEPPPRFQELGAWE 149


>06_03_0867 +
           25534760-25539620,25540662-25540857,25540957-25541104,
           25541673-25541751,25542151-25542238,25542330-25542600,
           25542676-25542718,25542801-25542904,25543374-25543790
          Length = 2068

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -3

Query: 242 PNSAPRPARDHEPVPPYAVIRAHRHPDYKPPSKYND 135
           P   P P    EP PP+       HPD   P  Y+D
Sbjct: 94  PPPPPLPQHRLEPPPPHYGFPPRGHPDAYSPPPYHD 129


>01_07_0176 - 41733845-41734834,41736058-41736588
          Length = 506

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 3   APVLGESPAGGGG 41
           AP+ GESP GGGG
Sbjct: 434 APIYGESPGGGGG 446


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,916,449
Number of Sequences: 37544
Number of extensions: 337964
Number of successful extensions: 1715
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1712
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)