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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10397
         (845 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1284 + 32376870-32376874,32376876-32376935,32377166-323773...    92   4e-19
08_01_0522 - 4545166-4545174,4545295-4545447,4545566-4545727,454...    83   4e-16
01_03_0176 - 13461331-13461573,13464880-13465106,13465214-13465535     30   2.0  
09_01_0093 - 1360596-1360625,1363562-1364266                           29   6.2  
09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110...    28   8.1  
04_04_0442 - 25229186-25229568,25229740-25232671                       28   8.1  

>04_04_1284 +
           32376870-32376874,32376876-32376935,32377166-32377301,
           32377439-32377596,32377791-32377881,32377975-32378094,
           32378166-32378234,32378354-32378445,32378578-32378680,
           32378761-32378868,32378949-32379011,32379073-32379144,
           32379322-32379399,32379478-32379540,32379617-32379680,
           32379817-32379902,32380456-32380569,32380760-32380837,
           32381068-32381303,32381486-32381576,32381706-32381894,
           32382082-32382117
          Length = 703

 Score = 92.3 bits (219), Expect = 4e-19
 Identities = 48/100 (48%), Positives = 64/100 (64%), Gaps = 7/100 (7%)
 Frame = +2

Query: 2   ELLSDQIKNFSRT---VNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDILSITGLVNY 172
           +++SDQ  NF      VNYEDPN N+  P+ +IHGNHDDP G  ++S++DILS   LVNY
Sbjct: 108 QVVSDQTINFPNRFGQVNYEDPNFNVGLPVFTIHGNHDDPAGVDNLSAIDILSACNLVNY 167

Query: 173 FGKW----TDYTHVRISPVLLQKGLTRLALYDLAI*KIRD 280
           FGK     +    + + PVL++KG T +ALY L    IRD
Sbjct: 168 FGKMDLGGSGVGEIAVYPVLVKKGTTFVALYGLG--NIRD 205



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
 Frame = +1

Query: 256 LSHLKDQRLSRLF-AEKKVEMERPD-----ETLDWFNLFVLHQNHADRGHSNYIPEGVLP 417
           L +++D+RL+R+F     V+  RP+        DWFN+ VLHQN       + I E  LP
Sbjct: 200 LGNIRDERLNRMFQTPHAVQWMRPETQDGMSVSDWFNILVLHQNRIKTNPKSAINEHFLP 259

Query: 418 NFLDLVVWGHEHDSHICPMK 477
            FLD +VWGHEH+  I P +
Sbjct: 260 RFLDFIVWGHEHECLIDPQE 279



 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 35/80 (43%), Positives = 48/80 (60%)
 Frame = +3

Query: 513 QPGSTVATSLAAGEALPKHCGLLEIHKGNFKLTPLPLQTVRPFIFKTIVLSEENIGSEDV 692
           QPGS+VATSL  GEA PKH  LLEI    ++ T +PL++VRPF +  +VL +E     D 
Sbjct: 289 QPGSSVATSLIDGEAKPKHVLLLEIKGNQYRPTKIPLRSVRPFHYAEVVLKDE--VDVDP 346

Query: 693 NENEKVQEFLKTELMKLLMR 752
           N+   V E L   +  L+ +
Sbjct: 347 NDQASVLEHLDKIVRNLIKK 366


>08_01_0522 -
           4545166-4545174,4545295-4545447,4545566-4545727,
           4545821-4545895,4545974-4546087,4546257-4546339,
           4546496-4546556,4546664-4546726,4546804-4546908,
           4547454-4547525,4547602-4547664,4547746-4547853,
           4547937-4548039,4548131-4548207,4548335-4548403,
           4548488-4548607,4548749-4548839,4549020-4549177,
           4549696-4549834,4551164-4551186
          Length = 615

 Score = 82.6 bits (195), Expect = 4e-16
 Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 7/100 (7%)
 Frame = +2

Query: 2   ELLSDQ---IKNFSRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDILSITGLVNY 172
           +++SDQ   ++N    VN+EDPN NI  P+ ++HG HD P G   +S+ DILS    VNY
Sbjct: 95  QVVSDQAACLQNRFGRVNFEDPNFNIGLPVFTVHGTHDGPAGVDGLSATDILSACNFVNY 154

Query: 173 FGK----WTDYTHVRISPVLLQKGLTRLALYDLAI*KIRD 280
           FGK     +D   + + PV ++KG T +ALY L    IRD
Sbjct: 155 FGKVDPGSSDVDQISVCPVFIKKGATSVALYGLG--NIRD 192



 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 31/68 (45%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
 Frame = +1

Query: 256 LSHLKDQRLSRLF-AEKKVEMERPDETLDWFNLFVLHQNHADRGHSNYIPEGVLPNFLDL 432
           L +++D++LSR+     K++  + D   DWFNLFV HQ       +N I E +LP+FLDL
Sbjct: 187 LGNIRDEKLSRMLQTHYKIQWMKADSEDDWFNLFVFHQKRRKGSSTNGINEQLLPSFLDL 246

Query: 433 VVWGHEHD 456
           V+WGHEH+
Sbjct: 247 VIWGHEHE 254



 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 29/63 (46%), Positives = 42/63 (66%)
 Frame = +3

Query: 510 VQPGSTVATSLAAGEALPKHCGLLEIHKGNFKLTPLPLQTVRPFIFKTIVLSEENIGSED 689
           + PGS+VATSL+  EA PK+  LLEI    +K T +PL++VRPF +  + L ++ +G E 
Sbjct: 270 IHPGSSVATSLSNAEAKPKNVVLLEIKGMQYKQTNIPLKSVRPFQYAEVQLKDQ-LGVEL 328

Query: 690 VNE 698
            NE
Sbjct: 329 NNE 331


>01_03_0176 - 13461331-13461573,13464880-13465106,13465214-13465535
          Length = 263

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 370 HADRGHSNYIPEGVLPNFLDLVVWGHEHDSHICP 471
           H D+G   ++PEGV P + +LV    +H S++ P
Sbjct: 129 HQDKGPV-FLPEGVFPPYRNLVTGNKQHASNVPP 161


>09_01_0093 - 1360596-1360625,1363562-1364266
          Length = 244

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 394 YIPEGVLPNFLDLVVWGHEHDSH 462
           Y+P GV PN+ +LV+   +H S+
Sbjct: 189 YLPGGVFPNYRNLVIGNQQHASN 211


>09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,
            1107272-1107531,1107897-1108084,1108187-1108311,
            1108485-1108521,1108802-1108893,1109023-1109133,
            1109242-1109352,1109576-1109669,1109833-1109945,
            1110316-1110411,1110510-1110617,1110665-1110814,
            1110910-1110990,1111205-1111276,1111553-1111646,
            1111759-1111787,1111870-1111967,1112065-1112160,
            1112399-1112620,1113002-1113158,1113472-1113627,
            1113703-1113930
          Length = 1045

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 275  RDFHVFLLKKKWKWRDPMK 331
            R  H +LL+ KWKW+ P K
Sbjct: 997  RSHHQWLLQFKWKWQKPWK 1015


>04_04_0442 - 25229186-25229568,25229740-25232671
          Length = 1104

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 22/76 (28%), Positives = 32/76 (42%)
 Frame = +1

Query: 256 LSHLKDQRLSRLFAEKKVEMERPDETLDWFNLFVLHQNHADRGHSNYIPEGVLPNFLDLV 435
           +  LK+ +  RL  +  +    P E  +  NL V        G       G L N  DL+
Sbjct: 191 IGRLKNLKTVRL-GQNAISGNIPVEIGECLNLVVFGLAQNKLGGPLPKEIGKLTNMTDLI 249

Query: 436 VWGHEHDSHICPMKGN 483
           +WG++  S I P  GN
Sbjct: 250 LWGNQLSSVIPPEIGN 265


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,554,371
Number of Sequences: 37544
Number of extensions: 420266
Number of successful extensions: 1010
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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