Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00026
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0685 - 20679883-20679927,20680034-20680087,20680179-206803... 64 1e-10
05_05_0359 + 24393254-24393260,24393952-24394163,24394243-243942... 61 1e-09
04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949... 54 1e-07
01_06_0992 - 33644712-33644726,33644769-33644822,33644915-336451... 52 6e-07
02_05_0490 + 29456825-29457499,29458771-29459057,29460922-294610... 29 3.5
04_04_1325 + 32666302-32667633 29 4.7
01_06_1413 + 37149038-37149295,37149392-37149603,37149687-371499... 29 4.7
>07_03_0685 -
20679883-20679927,20680034-20680087,20680179-20680390,
20680476-20680550,20683094-20683168,20686196-20686264,
20686349-20686502,20686577-20686654,20689102-20689194,
20689491-20689640,20690134-20690268,20691009-20691098,
20691412-20691453,20691796-20692053,20692131-20692207,
20693126-20693186,20693687-20693905,20694936-20695208,
20695314-20695505,20695841-20696011
Length = 840
Score = 63.7 bits (148), Expect = 1e-10
Identities = 25/43 (58%), Positives = 36/43 (83%)
Frame = +2
Query: 308 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 436
GTVV+ PE G+V+QLQGDQR+N+ +L ++G+VK E +K+HGF
Sbjct: 798 GTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 840
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/55 (50%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Frame = +1
Query: 109 MSIQNLNTFDPFADAIKSSEDDVQDG---LVHVRIQQRNGRKTLTTVQGLSSNMT 264
+ IQ FDPFA+A + + G VHVRIQQRNGRK+LTTVQGL +
Sbjct: 729 LDIQIPTAFDPFAEA-NAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFS 782
>05_05_0359 +
24393254-24393260,24393952-24394163,24394243-24394296,
24394400-24394444
Length = 105
Score = 60.9 bits (141), Expect = 1e-09
Identities = 23/43 (53%), Positives = 35/43 (81%)
Frame = +2
Query: 308 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 436
GTVV+ PE G+V+QLQGDQR+N+ +L ++G+ K + +K+HGF
Sbjct: 63 GTVVQDPELGQVIQLQGDQRKNVATFLVQAGIAKKDNIKIHGF 105
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/41 (60%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Frame = +1
Query: 136 DPFADAIKSSEDDVQDGL---VHVRIQQRNGRKTLTTVQGL 249
DPFA+A + + G VHVRIQQRNGRK+LTTVQGL
Sbjct: 3 DPFAEA-NAEDSGAGPGAKDYVHVRIQQRNGRKSLTTVQGL 42
>04_04_1237 -
31991817-31992569,31993452-31993550,31994343-31994976,
31995329-31995585
Length = 580
Score = 54.0 bits (124), Expect = 1e-07
Identities = 21/43 (48%), Positives = 32/43 (74%)
Frame = +2
Query: 308 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 436
G VVE E G+++QLQGD R ++ +L K+G+V+ + +KVHGF
Sbjct: 538 GNVVEDKELGKIIQLQGDHRNSVSDFLAKAGMVRKDNIKVHGF 580
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = +1
Query: 190 VHVRIQQRNGRKTLTTVQGL 249
VHVR+QQRNGRKTLTTVQG+
Sbjct: 498 VHVRVQQRNGRKTLTTVQGI 517
>01_06_0992 -
33644712-33644726,33644769-33644822,33644915-33645126,
33645436-33645472
Length = 105
Score = 51.6 bits (118), Expect = 6e-07
Identities = 28/50 (56%), Positives = 35/50 (70%), Gaps = 3/50 (6%)
Frame = +1
Query: 109 MSIQNLNTFDPFADAIKSSEDDVQDG---LVHVRIQQRNGRKTLTTVQGL 249
+ +Q + FDPFA+A + + V G VHVRIQQRNGRK+LTTVQGL
Sbjct: 4 LDVQLPSAFDPFAEA-NAEDSSVGAGSKDYVHVRIQQRNGRKSLTTVQGL 52
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = +2
Query: 308 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLV 406
GTVV+ PE G+V+QLQGDQR+N+ +L + +
Sbjct: 73 GTVVQDPELGQVIQLQGDQRKNVATFLVQIAFI 105
>02_05_0490 +
29456825-29457499,29458771-29459057,29460922-29461039,
29461451-29461972,29462058-29462170,29463033-29463053,
29463726-29463960,29464218-29464381,29464695-29464776,
29465077-29465166,29465625-29465858,29466347-29466418,
29466857-29467000,29467573-29467659,29467940-29468098,
29469216-29469476,29469789-29469836
Length = 1103
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -2
Query: 330 SGCSTTVPCTRTPSCMPARSSSGHIRGKALHRSQRLTP 217
SG S+T P T +PS +PA +SS G AL R P
Sbjct: 66 SGTSSTCPLTPSPSLLPAVTSSCVDGGGALTTRLRCCP 103
>04_04_1325 + 32666302-32667633
Length = 443
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = -2
Query: 477 MLSVDMLCFSRAA*KPCTLSCSGFTKPDLVSHWQIFSRWSP*SCSTSPYSGCSTTVPCTR 298
+L V RA KPCT + + +P++++ W++ + P C++ P
Sbjct: 80 LLHVQEAAAKRAVIKPCTPTLTPPNEPEVINAWELMAGLE----DDPPTPPCASHEPPAV 135
Query: 297 TPSCMPA 277
TP M A
Sbjct: 136 TPQWMQA 142
>01_06_1413 +
37149038-37149295,37149392-37149603,37149687-37149951,
37150099-37150407
Length = 347
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 60 VVSQRFVETKRPYVQSYVHPESQHI 134
V +QR+V K P+V+ + HPE H+
Sbjct: 299 VEAQRYVAEKLPWVRYHEHPEGGHL 323
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,980,469
Number of Sequences: 37544
Number of extensions: 366804
Number of successful extensions: 1006
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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