Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00022
         (509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719...   133   7e-32
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    59   2e-09
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590     57   9e-09
04_04_0303 + 24269467-24270741                                         31   0.41 
02_05_0029 - 25194827-25195095,25195129-25197970                       29   2.2  
03_02_0238 - 6687334-6687421,6687456-6687512,6688266-6688351,668...    27   8.8  

>04_03_0487 +
           16471538-16471540,16471694-16471795,16471880-16471908,
           16472619-16472745
          Length = 86

 Score =  133 bits (322), Expect = 7e-32
 Identities = 58/79 (73%), Positives = 66/79 (83%)
 Frame = +3

Query: 21  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 200
           IDLL+P    E+ KHK KRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC GC T+LC
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLC 66

Query: 201 QPTGGRARLTEGCSFRRKN 257
           QPTGG+ARLTEGCSFRRK+
Sbjct: 67  QPTGGKARLTEGCSFRRKS 85


>02_03_0220 +
           16545571-16545573,16545717-16545818,16545980-16546008,
           16549421-16553036
          Length = 1249

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 26/46 (56%), Positives = 32/46 (69%)
 Frame = +3

Query: 21  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHA 158
           IDLL+P    E+ KHK KRLV  PNS+FMDVKC GC+ ++  F  A
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNMSVRFDIA 52


>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
          Length = 45

 Score = 56.8 bits (131), Expect = 9e-09
 Identities = 24/39 (61%), Positives = 29/39 (74%)
 Frame = +3

Query: 21  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKI 137
           IDLL+P    E+ KHK KRLV  PNS+FMDVKC GC+ +
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFSM 45


>04_04_0303 + 24269467-24270741
          Length = 424

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 22/68 (32%), Positives = 32/68 (47%)
 Frame = +3

Query: 18  AIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 197
           A+ LLHP          L  ++PH  S  +D  CP  Y+I ++     RVV    C+++ 
Sbjct: 148 AVRLLHPFTGDTAELPPLGTVLPHLGSRLLD--CPAPYRIRSL----ARVV----CASVS 197

Query: 198 CQPTGGRA 221
           C  TG  A
Sbjct: 198 CSATGAGA 205


>02_05_0029 - 25194827-25195095,25195129-25197970
          Length = 1036

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 195  LCQPTGGRARLTEGCSFRRKNINI*VLDRALFNFKIFFPIV*WSDI 332
            +C+P G R  ++     + KN    VLDRA+++ K    +V   DI
Sbjct: 958  MCKPKGARELVSWVLHMKEKNCEAEVLDRAMYDKKFEMQMVQMIDI 1003


>03_02_0238 -
           6687334-6687421,6687456-6687512,6688266-6688351,
           6688410-6688589
          Length = 136

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 126 CYKITTVFSHAQRVVVCAGCSTILCQPTGGR 218
           CYKI+ ++SH Q ++    C  IL +PTG R
Sbjct: 96  CYKISKIYSHGQSLL----CLDIL-RPTGRR 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,739,215
Number of Sequences: 37544
Number of extensions: 241736
Number of successful extensions: 552
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)