SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0207.Seq
         (485 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389...    32   0.28 
08_02_0993 + 23390237-23390516,23391261-23391438,23391865-233919...    30   1.1  
11_03_0128 - 10437407-10438049,10438097-10438272                       29   1.5  
06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776     29   1.5  
10_08_0520 - 18495118-18498237                                         29   2.0  
01_01_1127 + 8930593-8932681,8932812-8933401                           29   2.0  
09_04_0408 + 17352110-17352619,17352709-17352834,17353036-173532...    29   2.6  
03_02_0507 - 8999902-9000649,9001106-9001225,9001314-9001394,900...    29   2.6  
09_04_0146 - 15080906-15081322,15081556-15081697,15081804-150818...    28   3.5  
01_06_1822 - 40132919-40133208,40134313-40134398,40135067-401355...    28   3.5  
08_02_0157 - 13385589-13385675,13386187-13386357,13386572-133867...    28   4.6  
05_06_0224 + 26546066-26546830                                         28   4.6  
12_02_0242 + 16213265-16213945,16216311-16216586,16217051-16217128     27   6.0  
10_08_0818 + 20801061-20801298,20801409-20801509,20801600-208018...    27   6.0  
07_01_0361 - 2655442-2655706,2656339-2656466,2658428-2658438,265...    27   6.0  
04_01_0051 - 542615-544066                                             27   6.0  
02_05_1245 + 35223504-35224778                                         27   6.0  
01_01_0062 + 497728-497922,499444-499481,499576-499598,501156-50...    27   8.0  

>01_05_0329 -
           21037980-21038378,21038517-21038737,21038827-21038905,
           21039002-21039071,21039144-21039255,21039359-21039398,
           21039482-21039676,21039925-21040044,21040684-21041106,
           21042386-21042928
          Length = 733

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = -3

Query: 378 IRTTTANSLQSS*RPRCHDAERSSTRALRPYSSEERR 268
           ++T T +   +S RPR  D+E  ++  L PYSSE++R
Sbjct: 442 MQTITDSGEDNSRRPRSGDSEIPNSSKLEPYSSEQQR 478


>08_02_0993 +
           23390237-23390516,23391261-23391438,23391865-23391940,
           23392037-23392212,23392296-23392377,23392639-23392716,
           23393525-23393686,23393980-23394243,23394698-23394802,
           23395304-23395447
          Length = 514

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 218 PNENCDGRLKSRFSVPERRSSDEYGRRAR 304
           P E  D  +K RF VP     D+YG +AR
Sbjct: 441 PREETDSIIKERFPVPRLVVCDQYGSQAR 469


>11_03_0128 - 10437407-10438049,10438097-10438272
          Length = 272

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 169 SSSRGTEYSTTCRTARRAYSKARMACDTGGKAS 71
           S S  +  STTCRT  RA   +   C TG + S
Sbjct: 132 SRSTASTSSTTCRTCCRATPNSTSPCKTGSRCS 164


>06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776
          Length = 833

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +3

Query: 201 SVSRHTQMRTAMGV*SHASPFPSDAPLTSMDVERAL 308
           SVS   + R A  V   +S FPS  P T  DV R L
Sbjct: 139 SVSSRRRARRAAAVTRRSSAFPSSTPPTQEDVRRGL 174


>10_08_0520 - 18495118-18498237
          Length = 1039

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 296 RARVELRSASWHRGLQELWRLFAVVVRMLGNVGD 397
           RAR+ L  A    G + +W   A+V R LGNV +
Sbjct: 751 RARILLSKARERGGTERVWMKSAIVERELGNVDE 784


>01_01_1127 + 8930593-8932681,8932812-8933401
          Length = 892

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 296 RARVELRSASWHRGLQELWRLFAVVVRMLGNVGD 397
           RAR+ L  A    G + +W   A+V R LGNV +
Sbjct: 656 RARILLSKARERGGTERVWMKSAIVERELGNVDE 689


>09_04_0408 +
           17352110-17352619,17352709-17352834,17353036-17353209,
           17353669-17353830,17353998-17354140,17354835-17354910,
           17355445-17355589,17355847-17355896,17356001-17356078,
           17357153-17357314,17357406-17357669,17357929-17358033,
           17358158-17358247,17358344-17358346
          Length = 695

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 218 PNENCDGRLKSRFSVPERRSSDEYGRRAR 304
           P+E  D  ++ RF VP     D+YG +AR
Sbjct: 639 PHEEADTIIRERFPVPRLVVCDQYGSQAR 667


>03_02_0507 -
           8999902-9000649,9001106-9001225,9001314-9001394,
           9001591-9001613
          Length = 323

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = -1

Query: 446 ENEKHRSNSELQY*AASRRHFPTSEPRQRTASRALEDR-GATTRSEAQRALYVHTRQRSV 270
           E+ KHRS+SE +    SR+H    +     ++   +D+     R E +R      R+R  
Sbjct: 187 ESGKHRSHSEKRKHKKSRKHKRRYDDSSDESNSESDDKESKRRRKEEKRLRKEERRRRRE 246

Query: 269 ARERRSVTSNAHR 231
            R RR     A +
Sbjct: 247 ERHRRKADRQASK 259


>09_04_0146 -
           15080906-15081322,15081556-15081697,15081804-15081887,
           15081982-15082039,15084038-15084572
          Length = 411

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -1

Query: 401 ASRRHFPTSEPRQRTASRALEDRGATTRSEAQRALYVHTRQRSVARE 261
           A+RR  P+  PR    S  + D+ ATT    +     H    S ARE
Sbjct: 16  AARRSSPSPGPRPAAGSSVVRDKDATTMMRRRLYQQQHPPSSSGARE 62


>01_06_1822 -
           40132919-40133208,40134313-40134398,40135067-40135566,
           40135708-40135905
          Length = 357

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 249 HASPFPSDAPLTSMDV-ERALSFAPRRGTAVFKSSGGCSLSW 371
           H  PF  +    + DV  +A+  A     A F S GGC++SW
Sbjct: 61  HTDPFQVNYRAVAADVISKAVIVAVIGAWARFMSKGGCAVSW 102


>08_02_0157 -
           13385589-13385675,13386187-13386357,13386572-13386792,
           13390090-13390240,13390682-13390726,13391121-13391330
          Length = 294

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 220 WVWRLTDHLTTASNGSDSSSRGT 152
           WV  L + +TTASN  D+ SR T
Sbjct: 163 WVELLVNEMTTASNMDDAKSRAT 185


>05_06_0224 + 26546066-26546830
          Length = 254

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +2

Query: 269 RRSSDEYGRRARVELRSASWHRGLQELWRLFAVVVRMLGNVGDWPL 406
           RR  D YG     + +  + H G+++   + A++ R LG    W +
Sbjct: 23  RRVVDMYGHHVGFKAKVVALHGGIRQARAVHAILSRQLGGEKKWEI 68


>12_02_0242 + 16213265-16213945,16216311-16216586,16217051-16217128
          Length = 344

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 249 HASPFPSDAPLTSMDVERALSFAPRR 326
           H SP+P   PL+ +D   AL+ A RR
Sbjct: 268 HQSPYPLPLPLSLLDTVAALATARRR 293


>10_08_0818 +
           20801061-20801298,20801409-20801509,20801600-20801817,
           20802461-20802824
          Length = 306

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = -2

Query: 424 TASYNIKRPVADISQHPNHDSEQPPELLKTAVPRRGAKLNARSTSILVRGASLGN 260
           TA  N    +++  Q+P H  E   ELL T VP     L    T++ VRG+  GN
Sbjct: 105 TAGVNTAFYLSNTEQYPGHHDEIDMELLGT-VPGEPYTL---QTNVYVRGSGDGN 155


>07_01_0361 -
           2655442-2655706,2656339-2656466,2658428-2658438,
           2659586-2659704,2659746-2659906,2660115-2660132
          Length = 233

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 311 LRSASWHRGLQELWRLFAV-VVRMLGNVGDWPLNIVTR 421
           LRS  W + +  LW  F+V +V  L +V  W L + +R
Sbjct: 58  LRSFEWLKQIVALWSQFSVNLVITLEDVAPWLLTVASR 95


>04_01_0051 - 542615-544066
          Length = 483

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
 Frame = -2

Query: 307 NARSTSILVRGASLGN--GEA*LQTPIAVLIWVWRLTDHLTTASNGSDSSSRGTEYSTTC 134
           N  ST + +  A+  N  G A L TP+ +    WR  D+ TTA+     S +    +T+ 
Sbjct: 68  NNGSTILHLTPAASSNKSGTALLPTPVTL----WRRLDYQTTAAQPGSYSKQDASLNTSF 123

Query: 133 RTARRAYSKARM--ACDTGGKASWLLKAWLF*VLKT 32
            T R  Y+ A+   A D    A+ L     F ++ T
Sbjct: 124 -TMRVQYANAKYSPADDAAAAAAGLNNGLAFVIVPT 158


>02_05_1245 + 35223504-35224778
          Length = 424

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
 Frame = -2

Query: 445 KTKNTVRTASYNIKRPVADISQHPNHDSEQPPELLKTAVPRRGAKLNARSTSILVRGASL 266
           KTK++V TAS       A   +   H  ++ P    T      +  +A ST+     ++ 
Sbjct: 30  KTKSSVATASMAASASTATTPRKHQHQHQRSPRATATQYSTTSSS-SAPSTATATSSSTA 88

Query: 265 GNGEA*LQTPIAVLIWVWRLTDH-LTTASNGSDSSSRGTEYSTTCRTARRAYSKA 104
            + +A L+  +  L  +  LT H L  A+    SS R    ST+ R + R +S A
Sbjct: 89  ASLQA-LRDSLPDLPLL--LTFHELAAATANFSSSHRLAPNSTSFRCSLRGHSAA 140


>01_01_0062 +
           497728-497922,499444-499481,499576-499598,501156-501262,
           501356-501407,501475-501559,501910-502000,502251-502289,
           502383-502455,503285-503344,503439-503512,503606-503698,
           503779-503880,504048-504128,504352-504426,504486-504614,
           504705-504809
          Length = 473

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 326 TTRSEAQRALYVHTRQRSVARERRSVTSNAHRSSHLGMAAH 204
           TTR++  R +Y H + ++V  E   V +    + +LG+A H
Sbjct: 263 TTRADLHRTVYTHAKVKAV--ELMLVDALVEANEYLGIALH 301


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,546,763
Number of Sequences: 37544
Number of extensions: 232783
Number of successful extensions: 859
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -