Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0056.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0018 - 391827-392254,392553-392608,393976-394005,394666-39...    30   2.0  
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333...    28   6.2  
12_02_0664 - 21659497-21659547,21659750-21659860,21659971-216600...    28   8.2  

>09_01_0018 -
           391827-392254,392553-392608,393976-394005,394666-394736,
           394819-394948,397627-397717,397798-397919,398014-398303
          Length = 405

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -2

Query: 301 EDNERTARLDVEFLEPRSNSSHDSHRINHVRRIRDFYADLRERRSXRTHR---EWYHV 137
           ED E    +D++  EP     HD +R     R RD     RER+  R HR    +YHV
Sbjct: 193 EDKEDEQPMDID--EPNGREKHDHYRGRSPTRDRD-----RERKHERHHRNLFNFYHV 243


>12_01_0423 +
           3337401-3337419,3337777-3338235,3338650-3338735,
           3338974-3339022,3339225-3339533,3339555-3339710,
           3339871-3340086,3340404-3340906,3341050-3341116,
           3341215-3341272,3341561-3341699,3341840-3341956,
           3342069-3342246,3342459-3343093
          Length = 996

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 95  GMKLNGMG*DGRTMYVIPFSMGPXGSPLSKIGVEITDSPY 214
           G +  G G    T    PF+  P GSP++  G +  +SP+
Sbjct: 25  GAQTGGFG-QANTTTTNPFAPKPFGSPITAFGAQTGNSPF 63


>12_02_0664 -
           21659497-21659547,21659750-21659860,21659971-21660039,
           21660442-21660513,21660669-21660749,21661256-21661348,
           21661581-21661733,21661846-21661897,21662033-21662218,
           21662830-21662949,21663059-21663297
          Length = 408

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 190 RRNHGFALRGLFYASHD*NWSEVLEILRQDEQF 288
           R  H F  RGLF+A  D N  E+L++  + E+F
Sbjct: 65  RPPHRFLRRGLFFAHRDLN--EILDLYEKGEKF 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,737,452
Number of Sequences: 37544
Number of extensions: 316658
Number of successful extensions: 647
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)