Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0025.Seq
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0136 + 18478227-18478254,18478514-18479113,18479344-18479684     29   3.2  
10_08_0469 + 18149039-18149420,18149537-18149649                       28   7.4  

>01_05_0136 + 18478227-18478254,18478514-18479113,18479344-18479684
          Length = 322

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 263 WPKLIFSLVVVYVSFPYYCDKLSRNRVVGIFGKYFTYRCT 144
           WP+L+F+   V  +F Y  DK S   +    G  F Y+ T
Sbjct: 29  WPRLVFTRPCVAATFRYGLDKESATNLDISVGGSFAYKIT 68


>10_08_0469 + 18149039-18149420,18149537-18149649
          Length = 164

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 156 VSLYYYCIFLSGFSNGYSDFVSLTCTTNCYF 64
           +S++YYCI+L  F +    F+S + T+   F
Sbjct: 131 ISMFYYCIWLKQFYSSVETFLSGSETSETIF 161


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,740,056
Number of Sequences: 37544
Number of extensions: 260701
Number of successful extensions: 475
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)