Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30191.Seq
(514 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 122 2e-28
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419... 111 3e-25
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 72 3e-13
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 31 0.41
11_01_0526 - 4140853-4141017,4141416-4141619 28 5.1
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 27 6.7
>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
Length = 130
Score = 122 bits (294), Expect = 2e-28
Identities = 56/74 (75%), Positives = 65/74 (87%), Gaps = 1/74 (1%)
Frame = +1
Query: 244 QSWQIVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEA 420
+S +IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEA
Sbjct: 57 RSGKIVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEA 116
Query: 421 RRKHLGGKILGFFF 462
RRK++GGK+LGFF+
Sbjct: 117 RRKNVGGKVLGFFY 130
Score = 105 bits (253), Expect = 2e-23
Identities = 47/62 (75%), Positives = 58/62 (93%)
Frame = +2
Query: 77 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGR 256
MVR++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM KHGYIGEFE VDDHR+G+
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60
Query: 257 LL 262
++
Sbjct: 61 IV 62
>02_03_0219 +
16541350-16541482,16541605-16541765,16541863-16541940,
16543176-16543445
Length = 213
Score = 111 bits (267), Expect = 3e-25
Identities = 53/70 (75%), Positives = 60/70 (85%), Gaps = 1/70 (1%)
Frame = +1
Query: 244 QSWQIVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEA 420
+S +IVV L GRLNKCGVISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEA
Sbjct: 57 RSGKIVVELNGRLNKCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEA 116
Query: 421 RRKHLGGKIL 450
RRK++GGK L
Sbjct: 117 RRKNVGGKEL 126
Score = 105 bits (251), Expect = 3e-23
Identities = 46/62 (74%), Positives = 58/62 (93%)
Frame = +2
Query: 77 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGR 256
MVR++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+G+
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60
Query: 257 LL 262
++
Sbjct: 61 IV 62
>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
Length = 129
Score = 71.7 bits (168), Expect = 3e-13
Identities = 30/70 (42%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Frame = +1
Query: 253 QIVVNLTGRLNKCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRK 429
+I V L GR+ C ++ R D+ +IE++ +LP+RQ+GY+V+TT G++DHEEA ++
Sbjct: 59 KINVELHGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQ 118
Query: 430 HLGGKILGFF 459
++GG++LG+F
Sbjct: 119 NVGGQVLGYF 128
Score = 66.5 bits (155), Expect = 1e-11
Identities = 27/56 (48%), Positives = 42/56 (75%)
Frame = +2
Query: 92 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGRL 259
+L+DAL+++ NAE+RGK L++P S V+V FL +M GYI +FE++D HR G++
Sbjct: 5 ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKI 60
>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 31.5 bits (68), Expect = 0.41
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 214 HRRV*NR**SQSWQIVVNLTGRLNKCGVISPRFDVPINDI 333
HRR+ +S +I++ GRLNK GVIS R DV + +
Sbjct: 906 HRRIWFVDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKL 945
>11_01_0526 - 4140853-4141017,4141416-4141619
Length = 122
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 280 LNKCGVISPRFDVPINDIERWT 345
LNKCGVI+P I+D+ T
Sbjct: 88 LNKCGVIAPNLPTKIDDLSHRT 109
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 118 YRF*GVTQYVHTHHGXDLA 62
+RF GVT ++THHG +A
Sbjct: 470 FRFDGVTSMMYTHHGLQVA 488
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,720,150
Number of Sequences: 37544
Number of extensions: 228277
Number of successful extensions: 450
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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