SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0065.Seq
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0903 - 25816395-25816493,25816695-25816779,25817390-258174...    88   6e-18
02_01_0614 - 4599035-4599083,4599209-4599303,4599410-4599494,460...    85   4e-17
08_02_1353 + 26335306-26335448,26336025-26336106,26336322-263364...    35   0.045
09_04_0656 + 19267392-19267432,19267530-19267637,19269114-192691...    33   0.14 
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389...    29   2.3  
06_03_0023 + 15558890-15559117,15559229-15560134                       29   3.0  
03_01_0369 - 2863159-2863491,2864149-2864214,2865045-2865140,286...    29   3.0  
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333...    28   6.9  
01_01_0807 + 6277670-6277916,6278020-6278235,6278329-6278426,627...    27   9.1  

>06_03_0903 -
           25816395-25816493,25816695-25816779,25817390-25817479,
           25818566-25818673,25818771-25818952,25819032-25819216,
           25820812-25820971
          Length = 302

 Score = 87.8 bits (208), Expect = 6e-18
 Identities = 55/146 (37%), Positives = 77/146 (52%)
 Frame = +3

Query: 78  MSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTQLPKSIPXGTHXVXRPSRXRX*T 257
           MSI  YNG AVVAM G++C AIA+D+R G+Q QTV+T   +            S      
Sbjct: 114 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDA 173

Query: 258 QTVXQXXXFRXNLYXLKEXXLXRLKXFSXMLSTLLYDRRFGPYLWNLS*LA*IPYXNPTL 437
           QT+ Q   FR  LY L+E    + + F+ ++S LLY++RFGPY      +A +   N   
Sbjct: 174 QTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQ-PVIAGLGEDNEP- 231

Query: 438 MVCXMA*LVAQMTLKILWVSGPCSKS 515
            +C M  + A+   K   VSG  S+S
Sbjct: 232 FICTMDCIGAKELAKDFVVSGTASES 257



 Score = 36.7 bits (81), Expect = 0.015
 Identities = 23/65 (35%), Positives = 31/65 (47%)
 Frame = +2

Query: 374 FRPLLMEPVIAGLDPLX*PNPYGLXHGLIGCPNDPEDFVGIGPLFEKLYGMCXALWGXPT 553
           F P   +PVIAGL       P+      IG     +DFV  G   E LYG C +++  P 
Sbjct: 213 FGPYFCQPVIAGLGEDN--EPFICTMDCIGAKELAKDFVVSGTASESLYGACESMY-KPN 269

Query: 554 XKPDE 568
            +P+E
Sbjct: 270 MEPEE 274


>02_01_0614 -
           4599035-4599083,4599209-4599303,4599410-4599494,
           4600107-4600196,4600772-4600879,4600983-4601197
          Length = 213

 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 53/147 (36%), Positives = 77/147 (52%)
 Frame = +3

Query: 75  NMSILAYNGGAVVAMKGQDCVAIATDKRFGIQAQTVSTQLPKSIPXGTHXVXRPSRXRX* 254
           ++ I  YNG AVVAM G++C AIA+D+R G+Q QTV+T   +            S     
Sbjct: 9   SLQIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATD 68

Query: 255 TQTVXQXXXFRXNLYXLKEXXLXRLKXFSXMLSTLLYDRRFGPYLWNLS*LA*IPYXNPT 434
            QT+ Q   FR  LY L+E    + + F+ ++S LLY++RFGPY      +A +   N  
Sbjct: 69  AQTLYQRLVFRHKLYQLREERDMKPQAFASLVSALLYEKRFGPYFCQ-PVIAGLG-DNDE 126

Query: 435 LMVCXMA*LVAQMTLKILWVSGPCSKS 515
             +C M  + A+   K   VSG  S+S
Sbjct: 127 PFICTMDCIGAKELAKDFVVSGTASES 153



 Score = 37.5 bits (83), Expect = 0.008
 Identities = 23/65 (35%), Positives = 32/65 (49%)
 Frame = +2

Query: 374 FRPLLMEPVIAGLDPLX*PNPYGLXHGLIGCPNDPEDFVGIGPLFEKLYGMCXALWGXPT 553
           F P   +PVIAGL       P+      IG     +DFV  G   E LYG C +++  P+
Sbjct: 109 FGPYFCQPVIAGLGDND--EPFICTMDCIGAKELAKDFVVSGTASESLYGACESMY-KPS 165

Query: 554 XKPDE 568
            +P+E
Sbjct: 166 MEPEE 170


>08_02_1353 +
           26335306-26335448,26336025-26336106,26336322-26336451,
           26336486-26336548,26336549-26336691,26336827-26336913,
           26337014-26337088
          Length = 240

 Score = 35.1 bits (77), Expect = 0.045
 Identities = 24/97 (24%), Positives = 36/97 (37%)
 Frame = +3

Query: 96  NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTQLPKSIPXGTHXVXRPSRXRX*TQTVXQX 275
           NGG  VA+ G D   +A D R  +    +S    K        V   S  +   + + + 
Sbjct: 10  NGGTCVAVAGADYCVVAADTRLSVGYSILSRDSSKIAHLADKCVLASSGFQGDVKALQRN 69

Query: 276 XXFRXNLYXLKEXXLXRLKXFSXMLSTLLYDRRFGPY 386
              +  LY             + +LS  LY +RF PY
Sbjct: 70  LTAKELLYEHNHNKKMSCPAMAQLLSNTLYYKRFFPY 106


>09_04_0656 +
           19267392-19267432,19267530-19267637,19269114-19269195,
           19269637-19269766,19269882-19270024,19270198-19270284,
           19270384-19270458
          Length = 221

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 23/97 (23%), Positives = 36/97 (37%)
 Frame = +3

Query: 96  NGGAVVAMKGQDCVAIATDKRFGIQAQTVSTQLPKSIPXGTHXVXRPSRXRX*TQTVXQX 275
           NGG  VA+ G D   +A D R  +    ++    K            S  +   + + + 
Sbjct: 12  NGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKALHKN 71

Query: 276 XXFRXNLYXLKEXXLXRLKXFSXMLSTLLYDRRFGPY 386
              R  LY  +          + +LS  LY +RF PY
Sbjct: 72  LAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPY 108


>06_03_0099 +
           16633928-16638213,16638299-16638386,16638823-16638950,
           16640008-16640278
          Length = 1590

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 101 GCGSRHEGPRLCGHRYGQAVW 163
           GCG R + PRL G    Q VW
Sbjct: 159 GCGPRRDAPRLVGRAVRQEVW 179


>06_03_0023 + 15558890-15559117,15559229-15560134
          Length = 377

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 142 MATQSWPFMATTAPPLYASIDILVI 68
           ++T +WPF+A  A  L  S+D +++
Sbjct: 4   LSTAAWPFLAAVAAALLCSVDAVIV 28


>03_01_0369 -
           2863159-2863491,2864149-2864214,2865045-2865140,
           2865530-2865632,2865771-2865838,2866570-2866712,
           2867050-2867242,2867602-2867640,2867742-2867807,
           2868617-2869651
          Length = 713

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 497 RYPQNLQGHLGN-QSSHXTDHKGWVXIGDLG 408
           R P  +QG+  N Q++  T  +GW+  GDLG
Sbjct: 438 RGPNVMQGYFNNVQATEFTIKQGWLHTGDLG 468


>12_01_0423 +
           3337401-3337419,3337777-3338235,3338650-3338735,
           3338974-3339022,3339225-3339533,3339555-3339710,
           3339871-3340086,3340404-3340906,3341050-3341116,
           3341215-3341272,3341561-3341699,3341840-3341956,
           3342069-3342246,3342459-3343093
          Length = 996

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 510 SNRGPIPTKSSGSFGQPIKPXYRP*GLGXH-RGSRPAMTGSISKG 379
           +   P  T S+G+FGQP  P +     G   + S PA  GS+S G
Sbjct: 58  TGNSPFGTTSTGAFGQPSAPTFGSTSTGAFGQPSAPAF-GSMSTG 101


>01_01_0807 +
           6277670-6277916,6278020-6278235,6278329-6278426,
           6278570-6278843,6282015-6282247
          Length = 355

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
 Frame = -3

Query: 468 GQPIKPXYRP*GLGXHRGSRPAMTGSIS------KGRNVGHTI 358
           G P+ P  +      HRG+  A+TG+ S      +GR +GHT+
Sbjct: 87  GLPLLPPSKAKNATFHRGANFAITGATSLDTPYFQGRGLGHTV 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,547,107
Number of Sequences: 37544
Number of extensions: 293768
Number of successful extensions: 549
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -