Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0047.Seq
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           30   2.0  
03_03_0053 + 14109636-14109948,14110075-14110302,14112030-141121...    30   2.0  
05_06_0240 - 26629218-26629323,26629412-26629490,26629656-266297...    29   6.2  
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700...    28   8.1  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 391 ITIHWPSFYNVV-TGKTLALPNLIALQH 471
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>03_03_0053 +
           14109636-14109948,14110075-14110302,14112030-14112181,
           14112305-14112578,14112687-14112739
          Length = 339

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 366 VPGPPXVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSTFLARFEHS 229
           VPG   +  +  YLG+   NK+ P+ Y +  C K+ + F     H+
Sbjct: 243 VPGNFPIGCVPGYLGIFP-NKLSPKDYDVFGCIKWLNDFSKYHNHA 287


>05_06_0240 -
           26629218-26629323,26629412-26629490,26629656-26629761,
           26629844-26629947,26630069-26630168,26630256-26630351,
           26630464-26630541,26630603-26630671,26630766-26630846,
           26630879-26630935,26631016-26631105,26631192-26631278,
           26631690-26631794,26631899-26631994,26632222-26632397,
           26632847-26633006,26633151-26633600
          Length = 679

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 538 AQLLGRAIGAASSLLRQLAKGGCAARRL 455
           A L G A G    L RQL++GGC  +RL
Sbjct: 85  ASLPGDANGRGLLLARQLSRGGCGEQRL 112


>03_03_0090 +
           14367033-14367279,14367402-14368205,14368314-14370039,
           14370135-14370219,14370398-14370457,14370744-14370836
          Length = 1004

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 339 INHYLGVLKTNKIEPRSYSIIPCTKYSSTFLARFE 235
           I H L +LK  KI P   +I  C +YS   ++ F+
Sbjct: 819 ILHALHILKAEKIFPTESNIADCIRYSEMNISGFD 853


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,768,467
Number of Sequences: 37544
Number of extensions: 476413
Number of successful extensions: 1060
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)