Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0015.Seq
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0005 - 16886553-16886946,16887079-16887404                       28   4.5  
05_05_0322 + 24094831-24094992,24095147-24095216,24096184-240963...    27   5.9  

>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 219 RNNFSIRYWSWNYRGC 172
           R+N S RYW W   GC
Sbjct: 90  RSNSSFRYWRWQPHGC 105


>05_05_0322 +
           24094831-24094992,24095147-24095216,24096184-24096307,
           24096403-24096502,24096598-24096825,24096916-24097041,
           24097092-24097376,24097490-24097648,24097751-24097929,
           24098078-24098210
          Length = 521

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -1

Query: 323 LERRLTDDISANVSVSPRMR 264
           LERR TD +S+ V V+P+MR
Sbjct: 283 LERRPTDYMSSQVEVNPKMR 302


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,825,137
Number of Sequences: 37544
Number of extensions: 250119
Number of successful extensions: 530
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)