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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0036.Seq
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0997 + 29565311-29565664,29566134-29566298,29566572-295666...    67   1e-11
06_03_1255 + 28780181-28781172,28782065-28782932                       32   0.50 
07_03_1392 - 26238885-26239007,26239137-26239235,26239636-262397...    30   2.0  
03_05_0052 - 20293197-20293310,20293938-20294024,20294133-202942...    30   2.0  
01_06_0020 + 25630728-25631023,25631308-25631548,25631629-256317...    30   2.0  
07_03_0734 + 21067747-21068569,21069678-21069812,21069967-210701...    29   3.5  
07_03_0601 - 19872780-19873099,19873148-19873151,19874196-198743...    29   3.5  
06_03_0287 - 19168685-19168735,19168847-19168884,19169517-191697...    29   3.5  
12_01_0378 - 2946916-2947590                                           29   4.7  
09_01_0128 + 1932721-1935181,1936099-1936256                           28   6.2  
01_06_0697 - 31301794-31302034,31302672-31303329,31303896-313040...    28   8.1  

>03_05_0997 +
           29565311-29565664,29566134-29566298,29566572-29566661,
           29566763-29566891,29568141-29568272,29568904-29568969,
           29569326-29569505,29569664-29569693,29569744-29569839,
           29569959-29570096,29571060-29571142,29571447-29571484,
           29571568-29571788,29572491-29572538
          Length = 589

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 30/63 (47%), Positives = 44/63 (69%)
 Frame = -2

Query: 456 RAVTRIAVREARLKEIKQELLNCKKLQGYFEENPSDLAALRRDKALHTVKVQQHLAHVPE 277
           R+VT   ++EAR ++IK E+LN +KL+ +F+ENP DL  L+ DK L   ++  HL  VPE
Sbjct: 464 RSVTTRDIKEARRQDIKNEILNSEKLKAHFDENPRDLDLLKHDKLLSNKEIPAHLRDVPE 523

Query: 276 YLL 268
           YL+
Sbjct: 524 YLI 526


>06_03_1255 + 28780181-28781172,28782065-28782932
          Length = 619

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -1

Query: 694 GYEDEIKELLSHLPKIYQAVLASATLSDDVLSFV-SIREKPLM 569
           G+ED+I+E+  H     Q +L SAT+ + + +F  S   KP++
Sbjct: 345 GFEDDIREVFDHFKAQRQTLLFSATMPEKIQNFAKSALVKPII 387


>07_03_1392 -
           26238885-26239007,26239137-26239235,26239636-26239720,
           26239825-26240028,26240360-26240682,26241904-26242575
          Length = 501

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = -1

Query: 691 YEDEIKELLSHLPKIYQAVLASATLSDDVLSFVSI 587
           +E++++ +   LPK  Q  L SAT+SD++ S + +
Sbjct: 239 FEEDLRVIFGSLPKKRQTFLFSATISDNLRSLLEL 273


>03_05_0052 -
           20293197-20293310,20293938-20294024,20294133-20294270,
           20295009-20295128,20295236-20295343,20296053-20296133,
           20296216-20296456,20297010-20297305
          Length = 394

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 694 GYEDEIKELLSHLPKIYQAVLASATLSDDVLSFVS 590
           G++D+I ++  +LP   Q  L SATL  ++L   S
Sbjct: 189 GFKDQIYDVYRYLPPELQVCLISATLPHEILEMTS 223


>01_06_0020 +
           25630728-25631023,25631308-25631548,25631629-25631709,
           25632109-25632216,25632329-25632448,25632806-25632943,
           25633064-25633150,25633802-25633915
          Length = 394

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 694 GYEDEIKELLSHLPKIYQAVLASATLSDDVLSFVS 590
           G++D+I ++  +LP   Q  L SATL  ++L   S
Sbjct: 189 GFKDQIYDVYRYLPPELQVCLISATLPHEILEMTS 223


>07_03_0734 +
           21067747-21068569,21069678-21069812,21069967-21070100,
           21070182-21070449,21070472-21070709,21070787-21070937,
           21071040-21071387
          Length = 698

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = -1

Query: 691 YEDEIKELLSHLPKIYQAVLASA----TLSDDVLSFVSIREKPLMDAVEQHLSNGFKGQK 524
           Y+  +++L + LPK   A L +A    T+ D V +    R      A E  + N F+G +
Sbjct: 41  YQSNLRQLSATLPKNASAALFAAGSLGTVPDIVYALALCRGDANASACESCVDNAFQGGQ 100

Query: 523 VLQKYN 506
            L  YN
Sbjct: 101 QLCPYN 106


>07_03_0601 -
           19872780-19873099,19873148-19873151,19874196-19874357,
           19874429-19874617,19874687-19875010,19875103-19875378,
           19875436-19875478,19876110-19876188,19876473-19876555,
           19876708-19876782,19877324-19877490,19877960-19878370
          Length = 710

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/48 (29%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = -1

Query: 691 YEDEIKELLSHLPKIYQAVLASATLSDDV--LSFVSIREKPLMDAVEQ 554
           +++++  ++S LPK+ Q +L SAT +  V  L+ VS+++   +   E+
Sbjct: 393 FQEQVDNVVSQLPKVRQTLLFSATQTKSVKDLARVSLKDPEYISVHEE 440


>06_03_0287 -
           19168685-19168735,19168847-19168884,19169517-19169727,
           19171461-19171643,19171879-19172028,19172161-19172256,
           19172378-19172464,19172535-19172741,19172823-19173047,
           19173150-19173261,19173397-19173453,19175522-19176882
          Length = 925

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 694 GYEDEIKELLSHLPKIYQAVLASATLSDDVLSFVSIREK 578
           G+  +I+ +++ LPK  Q +L SAT+ D+V     I  K
Sbjct: 626 GFRTDIERIVAALPKQRQTLLFSATVPDEVRQVCHIAMK 664


>12_01_0378 - 2946916-2947590
          Length = 224

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 251 IGRAAGSRYSGTCAKCCCTFTVCSALSLL 337
           + RA G    GTC  C C F VC  +++L
Sbjct: 3   MARAGGG---GTCCSCLCAFLVCIGVAVL 28


>09_01_0128 + 1932721-1935181,1936099-1936256
          Length = 872

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = -2

Query: 447 TRIAVREARLKEIKQEL-LNCKKLQGYFEENPSDLAALRRDKALHTVKVQQHLAHVPEYL 271
           T+  ++ AR  E   +L L CK +Q      PS++ AL   +++  +  ++ +    + +
Sbjct: 127 TKALLKRARCFEALDKLDLACKDVQKVLSLEPSNVTALELSESIKELMEEKDVLLEKQIV 186

Query: 270 LPAA-LPMKILWKTRKQSPRNLKLRN 196
            P A  P  IL K + +   + K RN
Sbjct: 187 SPVAEEPKAILAKDKIKRKVSRKFRN 212


>01_06_0697 -
           31301794-31302034,31302672-31303329,31303896-31304091,
           31304169-31304396,31304497-31304925,31305043-31305249,
           31305442-31305633,31305772-31306143
          Length = 840

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
 Frame = -2

Query: 519 YKSIICTRRSGRVQIPLQRPWRAVTRIAVREARLKEIKQELLNC-KKLQGYFEENPSDLA 343
           Y    C ++    ++  +    A   +A+ E R  E+  +L     KLQ       SD++
Sbjct: 329 YIGFSCLKKYLESELQKRYKEAAPATLALLEQRCSEVSMDLSRLDSKLQA-----TSDVS 383

Query: 342 ALRRDKALHTVKVQQHLAHVPEYLLPAALPMKILW-KTRKQ 223
            LRR   LH   +  HL  +   L  AA P   LW KT ++
Sbjct: 384 QLRRSAMLHAANICTHLRSL---LDGAADPAPELWGKTTEE 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,076,285
Number of Sequences: 37544
Number of extensions: 357040
Number of successful extensions: 1224
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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