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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0023X.Seq
         (452 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0366 - 16301133-16302592,16302702-16302750                       27   5.3  
06_01_0277 - 2039129-2040280                                           27   5.3  
03_03_0266 - 16014740-16015045,16015566-16015601,16015623-160156...    27   5.3  
12_02_0658 + 21608474-21609401,21609996-21610012                       27   7.1  
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752...    27   7.1  
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574...    27   7.1  
10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058...    27   9.3  
08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,448...    27   9.3  
02_05_0659 + 30679809-30680253,30680699-30680715,30682373-306825...    27   9.3  
02_02_0637 - 12491706-12492575,12492580-12492657                       27   9.3  

>08_02_0366 - 16301133-16302592,16302702-16302750
          Length = 502

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 414 RLNGRYWMWTRSLRSRWKSSPWMTASAHRAT 322
           R   R   W  SLR ++  +PW+TA    AT
Sbjct: 450 RFRSRPRRWMASLRQKYFLNPWLTAGLVAAT 480


>06_01_0277 - 2039129-2040280
          Length = 383

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -1

Query: 251 IHPVHVHRNHLFPSFLVVHRVLHHGNH--DLVGLPSLAGSWKQEQVKIIYYDVNCV 90
           + P+ +   H FP +  V  ++H G +  D  G PS+  S  +E ++   +DV+ V
Sbjct: 264 LFPLLLSPAHRFPFYDGVFDLVHVGTNALDEGGAPSMGNSGTEEALEFFMFDVDRV 319


>03_03_0266 - 16014740-16015045,16015566-16015601,16015623-16015643,
            16016331-16016591,16017504-16018985,16019834-16019989,
            16020154-16020277,16020399-16020615,16020877-16021774,
            16022947-16023291,16023371-16023565,16023751-16024453,
            16024866-16025467
          Length = 1781

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 408  NGRYWMWTRSLRSRWKSSPWMTASAHRATSETTW 307
            +G+ WMW R L+  W S+ +  A+     S+  W
Sbjct: 918  DGKIWMWHRCLKCPW-SNGFPPATLRIVMSDAAW 950


>12_02_0658 + 21608474-21609401,21609996-21610012
          Length = 314

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 363 KSSPWMTASAH-RATSETTWASTHRRPAP 280
           +S PW+   A  R T++T W    RRP P
Sbjct: 13  RSRPWLLDDAGGRWTTKTVWMDDPRRPPP 41


>12_01_0818 +
           7524549-7524747,7524855-7525863,7525964-7526108,
           7526206-7526295,7526404-7526553,7527333-7528094,
           7528177-7528496,7528581-7528707,7528792-7528959,
           7529054-7530466,7530563-7530823,7530983-7531144,
           7531976-7532121,7532601-7532667,7533483-7533587
          Length = 1707

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 405 GRYWMWTRSLRSRWK 361
           GR WMWTR LR   K
Sbjct: 829 GRIWMWTRCLRCNGK 843


>09_02_0203 -
           5746068-5746307,5746469-5746729,5746833-5748239,
           5748588-5748714,5748800-5749119,5749202-5749963,
           5750749-5750898,5751007-5751096,5751196-5751340,
           5751440-5751617,5751753-5752448,5752555-5752753
          Length = 1524

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 405 GRYWMWTRSLRSRWK 361
           GR WMWTR LR   K
Sbjct: 784 GRIWMWTRCLRCNGK 798


>10_07_0172 +
           13804803-13805293,13805423-13805537,13805766-13805831,
           13805921-13806009,13806103-13806193,13806312-13806458,
           13806575-13806667,13806745-13806846,13806957-13807541,
           13808523-13808813,13808866-13808937
          Length = 713

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -1

Query: 260 LMQIHPVHVHRNHLFPSFLVVHRVLHHGNHDLVGLPSLAGSWKQEQVKIIYY 105
           ++ +  +H    HL P     H + H G  DL G+ +        Q K+++Y
Sbjct: 635 VLVVEELHSDLGHLTPGAGAAHHLHHDGKFDL-GIHAAQAGSIYSQAKLMFY 685


>08_01_0514 +
           4481383-4481903,4482532-4484590,4485038-4485107,
           4485434-4485660,4486238-4486324,4486408-4487114,
           4487206-4487270,4487323-4487837,4487898-4487991,
           4488116-4488398,4488494-4488689,4488913-4489254
          Length = 1721

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +3

Query: 48  FFVVVLILRDIRSWYAIDIVIYN 116
           +F+V+  +RD  +W AI++ ++N
Sbjct: 175 YFIVIDDVRDAEAWKAIELALFN 197


>02_05_0659 +
           30679809-30680253,30680699-30680715,30682373-30682530,
           30682570-30682846
          Length = 298

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 375 RSRWKSSPWMTASAHRATSETTWASTHRRPAPRWSTATS 259
           R  W+S+P    +  R+T+    A  ++RP PR + A S
Sbjct: 10  RFLWRSTPSPHPALGRSTTPPHAARWYKRPLPRTAAAAS 48


>02_02_0637 - 12491706-12492575,12492580-12492657
          Length = 315

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 366 WKSSPWMTASAHRATSETTWASTHRRP 286
           W+++PW+  S    TS T+ ++   RP
Sbjct: 135 WRTTPWLPTSCSSPTSSTSPSARATRP 161


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,895,221
Number of Sequences: 37544
Number of extensions: 188076
Number of successful extensions: 645
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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